PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000053.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 672aa MW: 74219.9 Da PI: 5.377 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 303.6 | 4.8e-93 | 311 | 671 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 ++++Ae++ +gd+ a+ +Larl+++ sp +p++R+a+yf+eAL+ l+ + + +lpp+ ++ + + ++ a+k+fsevsP Itr_sc000053.1_g00010.1 311 HVFKAAEVILTGDFLHAEMILARLNHQLSPGVKPLERAAFYFKEALHLPLSM--PISATSLPPRIPTPVDGVFKMGAYKVFSEVSP 394 5789**********************************************99..555566999*9999****************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175 +++f ++t NqaIleav+g+e++Hi Dfdi G+QW +++q+L R++ +psl+iT+++sp++++ e++ ++e+L++fA+e+gv+ Itr_sc000053.1_g00010.1 395 LIQFMNFTSNQAILEAVDGAECIHIFDFDIAFGAQWSSFMQELPRRNRRAPSLKITAFASPSTHHPIEINLMHENLTQFANEVGVK 480 ************************************************************************************** PP GRAS 176 fefnvlvakrledl...eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258 fe +v+ ++++ +++r ++ E++aVn+ l + + +++ + +L+ +k+lsPkvvv ++ ++++ +F +++l Itr_sc000053.1_g00010.1 481 FELEVVNFDSFDPSsypVSSSFRSSESEVIAVNFPLWSISSY------RETLPLLLHYIKQLSPKVVVSLDRGYERTELPFPHHLL 560 *****944444443111234567777*********9777777......3335569******************************* PP GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 +al+y+ alf s++a+ + e+ +k+Er+l++++i+++v + ++ Wr+ + +aGF p p+s++a++qa+++++++ Itr_sc000053.1_g00010.1 561 NALQYFEALFKSIDAG-NVTPEASNKIERFLFQPSIESIVFGHLRF----PDQMPPWRNLFASAGFLPQPFSNFAETQAECVVKRT 641 *************887.567899*****************998887....8999******************************** PP GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +g++v+++++sl l+W++r+L+s++aWr Itr_sc000053.1_g00010.1 642 ETRGFHVQKHHASLALCWQNRELLSATAWR 671 *****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.146 | 282 | 651 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-90 | 311 | 671 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MIGMQYNSNS LQGKSVLEVS RFGSAISPSL VPSDAAKLKK NGGFSSSEPV SVLDTRSPSP 60 STSTSAMEAN PNPVGRKENS LGELHPAPEW SEGPEKFDLG MEDWEGLLPE SGGSDQFLLR 120 WISGDVEDPS LSLKQLLQGG NPSEIHCNVG FGASDSDNYN GNSQGPNVNF PLAILGSGLS 180 VQELKNEQKP QNFNSPVLSE LQNVVTIPNV FSSELYGIQQ EQPPLKRQNL GGVSSSGFRV 240 SEGGVFVNPS NGLLVRKQVE LGQLEQAQIG CDRPPDILCV HRGEQAPLLV PKREAGFGND 300 SLQEQQAVYD HVFKAAEVIL TGDFLHAEMI LARLNHQLSP GVKPLERAAF YFKEALHLPL 360 SMPISATSLP PRIPTPVDGV FKMGAYKVFS EVSPLIQFMN FTSNQAILEA VDGAECIHIF 420 DFDIAFGAQW SSFMQELPRR NRRAPSLKIT AFASPSTHHP IEINLMHENL TQFANEVGVK 480 FELEVVNFDS FDPSSYPVSS SFRSSESEVI AVNFPLWSIS SYRETLPLLL HYIKQLSPKV 540 VVSLDRGYER TELPFPHHLL NALQYFEALF KSIDAGNVTP EASNKIERFL FQPSIESIVF 600 GHLRFPDQMP PWRNLFASAG FLPQPFSNFA ETQAECVVKR TETRGFHVQK HHASLALCWQ 660 NRELLSATAW RC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-32 | 331 | 671 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019156733.1 | 0.0 | PREDICTED: scarecrow-like protein 6 isoform X2 | ||||
TrEMBL | A0A1J6IGI6 | 0.0 | A0A1J6IGI6_NICAT; Scarecrow-like protein 6 | ||||
STRING | XP_009803487.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6986 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 7e-99 | GRAS family protein |