PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000051.1_g00036.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 593aa    MW: 66309.6 Da    PI: 6.9318
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000051.1_g00036.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.82.1e-27347401156
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              k +++WtpeLH++Fv+aveqL G ++A+P++ile+mkv+gLt+++++SHLQkYR++
  Itr_sc000051.1_g00036.1 347 KVKVDWTPELHKKFVQAVEQL-GLDQAIPSRILEVMKVEGLTRHNIASHLQKYRMH 401
                              5689*****************.********************************96 PP
2Response_reg31.77.8e-12201261109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+ d++ + +  +r+ le+ +y +v ++++  eal  +  k   +++ ++ ++ ++++  e++k +++++ +lp i+v+     +
  Itr_sc000051.1_g00036.1  20 VLLLDEDSNSAAKMRTKLEEMDY-IVSTFQNENEALLAIASKSveFHVAIVEVNTSNSN--EVFKFLETAK-DLPTILVSNVYCLN 101
                              79999999***************.***************99987788888888877765..8999998888.9*******9999** PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                              ++ +++ +Ga +fl Kp + ++l++
  Itr_sc000051.1_g00036.1 102 TMMKCIALGAVEFLQKPLSDDKLRN 126
                              **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.27E-1416139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-1317139No hitNo description
PROSITE profilePS5011019.65519132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.9E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.99E-821131No hitNo description
PROSITE profilePS5129415.348344403IPR017930Myb domain
SuperFamilySSF466896.0E-18345403IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-27345404IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-25347401IPR006447Myb domain, plants
PfamPF002492.3E-8350399IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MLCTANDLLG WKDFPKGLSV LLLDEDSNSA AKMRTKLEEM DYIVSTFQNE NEALLAIASK  60
SVEFHVAIVE VNTSNSNEVF KFLETAKDLP TILVSNVYCL NTMMKCIALG AVEFLQKPLS  120
DDKLRNIWQH VVHKVCSIRY ECHSNAYCFL DFSPRFYGKR ALSLLSKQAF NAGGGKDVES  180
LKPVKESLVS MLQLRSTKNE ANTANSDETE QSTSVQENNR DTLSSVCDKY PAPSTPTLKQ  240
CVRSLDDGEC RDQTNLSMEH DSVEHDGESK SVETTYCNSV SETIPVINPP VIKQERESSP  300
EQAGKNGNSA CSESKDARAN ANSSECGDPK KPSGVNSSTG TKANKKKVKV DWTPELHKKF  360
VQAVEQLGLD QAIPSRILEV MKVEGLTRHN IASHLQKYRM HRRQILPKEN EWKWPLSRDS  420
TQRSCYPRKP VMAFPQYHSA PTIPAGHQFY SAWSHPGSYP GAHVWGSPYH YPGWQPTDDW  480
NWNSNTGVYA QAWGCPVMPP PQGSYPTYPQ ILQNTSGHRR SGGEQDRYNM LEKTYDIQPA  540
EELIDKVVKE AINNPWLPLP LGLKPPSTDS VLNELSKQGI STIPPRTNGS DLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16352401655Transcription factor LUX
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156488.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_019156489.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_019156490.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
TrEMBLA0A1S3X7R10.0A0A1S3X7R1_TOBAC; two-component response regulator-like APRR2
STRINGXP_009595585.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-134ARR-B family protein