PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000050.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 340aa    MW: 37772.3 Da    PI: 7.2823
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000050.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.28.5e-16255280126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +ktelC+ +++tG C+yGd+C+FaHg
  Itr_sc000050.1_g00004.1 255 FKTELCNKWQETGACPYGDNCQFAHG 280
                              79***********************9 PP
2zf-CCCH17.38.3e-06293318126
                              --S---SGGGGTS.--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                              ykte Cr  +  G  C+yG rC+F H+
  Itr_sc000050.1_g00004.1 293 YKTEVCRMVLN-GdPCPYGHRCHFRHS 318
                              9******9999.55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-19249287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-11251286IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-10254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.727254282IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-13255280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8288322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11288321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488292320IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-5292319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEYDLLSSPS FLSQASNASF DFNSLYNSIM IPPNSHLIGE SSSGGESQAL EATTSGIPHS  60
QLLLDQQYHR DLMDRHNAVL AHLRETAKQA QALRQENINL KMANLDLNNR LTLLLKASSD  120
YAAKFGAPSK FGMRRKSVPV GDDESTSQGQ LWEDMGATTS SGDCHESPTS VMDSGRVERN  180
NVDRVLLPKS ISVRSSGYLK TAQAGGSRPE NRKGCIGFSG LAQAWCDTPE QRVYLKGAKK  240
EEQPLELEVY NQGMFKTELC NKWQETGACP YGDNCQFAHG LEELRPVLRH PRYKTEVCRM  300
VLNGDPCPYG HRCHFRHSLT DQEKLIRALN SRSLNSSLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-22255318467Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164905.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_019164906.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
TrEMBLA0A3Q7GF011e-125A0A3Q7GF01_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000785221e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-62C3H family protein