PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000049.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 224aa MW: 25789.3 Da PI: 8.649

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000049.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6e-06	15	62	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +E++RR+++++ + L +llP+ + +++ + + ++v+YI+ Lq Itr_sc000049.1_g00017.1 15 KYVEKNRRNHLKNLYKHLFSLLPPhL---SQEGIALHDQVDETVKYIRWLQ 62 568*********************55...4444888899999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.94	9	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-10	12	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-9	14	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0014	15	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.56E-5	17	66	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MASRLPKTAP KLERKYVEKN RRNHLKNLYK HLFSLLPPHL SQEGIALHDQ VDETVKYIRW 60 LQNEIEKSKH KKEELQKKKM MMMSSSSSRK RHHSSSCDDG NKSSPLVQVL DISPGIHVVL 120 VNDLEGVAAF HNIIRTLHQH GLEVANATFQ QHGNSMLQVI HQQGFGGTIM LSDKLKQVLY 180 GSSNPCPEET EQPSPDYSWD NNNYDIWGFH SLEPFQQLQY PPPY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172397.1	1e-126	PREDICTED: transcription factor bHLH36-like isoform X4

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5297	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	7e-15	bHLH family protein