PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000043.1_g00031.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 380aa MW: 42040 Da PI: 5.3703

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000043.1_g00031.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.8	1.6e-19	8	48	10	50
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++ + +R++ ilKK +ELS+LCd++v+vi++s++gkl +++ Itr_sc000043.1_g00031.1 8 KTRYQNRKASILKKSKELSTLCDVKVCVIVVSPDGKLETWP 48 57899***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.0E-5	1	49	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.727	1	47	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.6E-15	3	47	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.02E-14	6	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-6	13	28	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-6	28	49	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MAEEKAMKTR YQNRKASILK KSKELSTLCD VKVCVIVVSP DGKLETWPDN LNDVKAVLSA 60 VKESSKPIRS ENHRGGGDRR LCSRIKIPEG KDPESCGGLG NNNNADEVCY DVCGTNFGLG 120 IPDMTTYCPN HWNGSENFGK YMVRNEDPNL GYFGCGIHET DESGNNLSSS LAYHDQQYEI 180 GIGSSSVCGT NFGMGIPDMT SRVNEAPRSY CPNHWNGNGK ENDKSNSENF GKYMVTNEEP 240 NLGYYVCGRH ESGNNLDRGC GSGRYHHPYQ YEIGSSSFNS GLNHFCNQQP SSSLVYHDQQ 300 YEIGIGSSSA LNTTGVNNNL VHPNQQHTLD YQQYLMGNSA FNSAVGVDYP NQEPRVGVDY 360 PDQEPSSSLA YHHYDIGIWE

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MAEEKAMKTR YQNRKASILK KSKELSTLCD VKVCVIVVSP DGKLETWPDN LNDVKAVLSA  60
VKESSKPIRS ENHRGGGDRR LCSRIKIPEG KDPESCGGLG NNNNADEVCY DVCGTNFGLG  120
IPDMTTYCPN HWNGSENFGK YMVRNEDPNL GYFGCGIHET DESGNNLSSS LAYHDQQYEI  180
GIGSSSVCGT NFGMGIPDMT SRVNEAPRSY CPNHWNGNGK ENDKSNSENF GKYMVTNEEP  240
NLGYYVCGRH ESGNNLDRGC GSGRYHHPYQ YEIGSSSFNS GLNHFCNQQP SSSLVYHDQQ  300
YEIGIGSSSA LNTTGVNNNL VHPNQQHTLD YQQYLMGNSA FNSAVGVDYP NQEPRVGVDY  360
PDQEPSSSLA YHHYDIGIWE

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3723	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02235.1	5e-12	AGAMOUS-like 51