PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000043.1_g00019.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 286aa MW: 31773.2 Da PI: 8.1069

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000043.1_g00019.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.3	1.1e-19	11	52	10	51
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++ + +R++ ilKK +ELS+LCd++v+vii+s++gkl ++++ Itr_sc000043.1_g00019.1 11 KTRYENRKTSILKKGKELSTLCDTKVCVIIVSPDGKLETWPN 52 68899***********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.755	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.0E-5	3	52	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-13	6	50	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-13	7	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-6	16	31	IPR002100	Transcription factor, MADS-box
CDD	cd00120	3.14E-12	17	51	No hit	No description
PRINTS	PR00404	2.2E-6	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MAEEQKKKAM KTRYENRKTS ILKKGKELST LCDTKVCVII VSPDGKLETW PNNLNDVKAI 60 LSAVKKSGKP IRSENLRKNN SSSSRIKIPK SVKGKEIDCV VGNNVVDEVL YAVSGADQEN 120 NNNNFGTGIP GTSLADMRVN QAPTSHYSYY QWNGNGYIGD MVTNQESTYY GTQFCNMPSN 180 QEPCSPRHCY HQYEMGSSSS SAFNSGVLNF SNQEQPSLIA YHHQQQNVIG NNSSALNTTG 240 LNNNLVHPNL AYQQYVMGNS SAFTSGVNYP NQEPTSPAYQ HYEIWD

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3723	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02235.1	5e-12	AGAMOUS-like 51