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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Itr_sc000043.1_g00004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
GRAS |
| Protein Properties |
Length: 142aa MW: 15994.3 Da PI: 7.6361 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000043.1_g00004.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 21.4 | 2.6e-07 | 1 | 43 | 1 | 43 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaa 43
+++ L++cAe +s +d+++a++l++ l + sp +d+ +Rla
Itr_sc000043.1_g00004.1 1 MRQFLISCAELISRSDFSAAHRLISFLASNTSPFADSSERLAC 43
5789*************************************96 PP
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| 2 | GRAS | 100.7 | 2.2e-31 | 52 | 134 | 86 | 171 |
GRAS 86 evsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
++P+++f+hltaNqaIlea++ +++Hi+Dfd+++G+QWp+L+qaLa+R +pp+lRiTg ++ + + l++tg+ LakfA
Itr_sc000043.1_g00004.1 52 PITPFIRFTHLTANQAILEAIDDGqrNAIHILDFDVMHGIQWPPLMQALADR-YPPPKLRITGTEN----DMDILRRTGDGLAKFA 132
589******************97756899**********************9.999**********....**************** PP
GRAS 170 ee 171
++
Itr_sc000043.1_g00004.1 133 HR 134
86 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 142 aa
Download sequence Send
to blast |
MRQFLISCAE LISRSDFSAA HRLISFLASN TSPFADSSER LACSVLLFVS QPITPFIRFT 60
HLTANQAILE AIDDGQRNAI HILDFDVMHG IQWPPLMQAL ADRYPPPKLR ITGTENDMDI 120
LRRTGDGLAK FAHRGSQRWL SQ
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
| Publications
? help Back to Top |
- Li X, et al.
Control of tillering in rice.
Nature, 2003. 422(6932): p. 618-21
[PMID:12687001] - Sun F, et al.
Identification and functional analysis of the MOC1 interacting protein 1.
J Genet Genomics, 2010. 37(1): p. 69-77
[PMID:20171579] - Sanyal A, et al.
Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
Mol. Biol. Evol., 2010. 27(11): p. 2487-506
[PMID:20522726] - Yan WH, et al.
A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
Mol Plant, 2011. 4(2): p. 319-30
[PMID:21148627] - Xu C, et al.
Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
Nat Commun, 2012. 3: p. 750
[PMID:22434193] - Lin Q, et al.
Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
Nat Commun, 2012. 3: p. 752
[PMID:22434195] - Liang WH,Shang F,Lin QT,Lou C,Zhang J
Tillering and panicle branching genes in rice.
Gene, 2014. 537(1): p. 1-5
[PMID:24345551] - Zhang B, et al.
Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
Sci Rep, 2015. 5: p. 12211
[PMID:26197925]
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