PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000031.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 354aa MW: 38180.4 Da PI: 8.3658

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000031.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.7e-12	282	327	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L AveYIk+Lq Itr_sc000031.1_g00007.1 282 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAVEYIKDLQ 327 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.742	276	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-16	279	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.81E-12	280	329	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-14	281	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.8E-13	282	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-9	282	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MDPSANSEFG NSSGRNSGLL RFRSAPSSVL ENFTHGVEKS GGSGSRFNLV GSTNGGLVSQ 60 GSLNLEDSGY VNGFSGLPPQ YPRQSSSAQL VDGGGLLGSN LMRQNSSPPG LFSHLTPQNG 120 YAAMKGYRMA VHGDTSLSSS RLKSPLSYSS GCVGGMLSQI TEVENESNAE SCEDGEKPGG 180 NGNADTRFFG HGFPFASWSD PPNFAENLNG LKRELDNDAN LFAAANTQVG DMGTQPQNLS 240 HPLGLQKTDS AAISAMEKLS HFPDTVPWNI RAKRGCATHP RSIAERVRRT RISERMRKLQ 300 ELVPNMDKQT NTADMLDFAV EYIKDLQRQY KTLADCRDKC KCSAMKKPAS NQRV

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MDPSANSEFG NSSGRNSGLL RFRSAPSSVL ENFTHGVEKS GGSGSRFNLV GSTNGGLVSQ  60
GSLNLEDSGY VNGFSGLPPQ YPRQSSSAQL VDGGGLLGSN LMRQNSSPPG LFSHLTPQNG  120
YAAMKGYRMA VHGDTSLSSS RLKSPLSYSS GCVGGMLSQI TEVENESNAE SCEDGEKPGG  180
NGNADTRFFG HGFPFASWSD PPNFAENLNG LKRELDNDAN LFAAANTQVG DMGTQPQNLS  240
HPLGLQKTDS AAISAMEKLS HFPDTVPWNI RAKRGCATHP RSIAERVRRT RISERMRKLQ  300
ELVPNMDKQT NTADMLDFAV EYIKDLQRQY KTLADCRDKC KCSAMKKPAS NQRV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019187708.1	0.0	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	5e-81	BH130_ARATH; Transcription factor bHLH130
TrEMBL	M1AEJ4	1e-122	M1AEJ4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400021062	1e-123	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	6e-77	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]