PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000025.1_g00029.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 371aa    MW: 42121.1 Da    PI: 7.1387
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000025.1_g00029.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.6e-1185115434
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                              +k++rr+++NReAAr+sR+RKka++++Le+ 
  Itr_sc000025.1_g00029.1  85 DKAQRRLAQNREAARKSRLRKKAYVQQLETS 115
                              89**************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.004282135IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.92184128IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.8E-784128No hitNo description
PfamPF001707.7E-885119IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.99E-786120No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
PfamPF141443.1E-25173246IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVSYQAMNIP STSQFAPTRM GLYEPFHQMS LWEETLRGDM IPSTGGCMVT QANERTDDNK  60
FEYKYNESAI PSPSGDNQAG KSLTDKAQRR LAQNREAARK SRLRKKAYVQ QLETSRLKLA  120
QLELELEKAR QQGICMFGAS SSSIGLCATL NPGIAVFELD YANWIEEHQK KTSELRNFLQ  180
PPTNDMELEV LVPSVLNHYC DLFRMKLEVA KADVFYLISG AWRTPVERFY LWIGGFRPSE  240
MIKVVLPQLG DLSEQQLLNV NNLRHCCQQA EDALTQGMDK LQQTLSQNMT LITTGAGTYT  300
AQMASAMEKL EALESFVNQA DHLRQQTLLQ MSRILTTHQA ARGLLTFGEY FHRLRSLSSL  360
WAARPRETLD C
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00157DAPTransfer from AT1G22070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174140.10.0PREDICTED: transcription factor TGA7-like isoform X3
RefseqXP_019174141.10.0PREDICTED: transcription factor TGA7-like isoform X3
SwissprotQ392341e-136TGA3_ARATH; Transcription factor TGA3
SwissprotQ392371e-136TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A3Q7G6X70.0A0A3Q7G6X7_SOLLC; Uncharacterized protein
TrEMBLM1CMW10.0M1CMW1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000708840.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.11e-127TGA1A-related gene 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  5. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  6. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  7. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]
  8. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]