PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000024.1_g00038.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 302aa    MW: 33180.1 Da    PI: 5.1379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000024.1_g00038.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19112161255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +++GVr+++ +g+W+AeIrdp    +r +r++lg+f taeeAa  ++ a+ +l+g
  Itr_sc000024.1_g00038.1 112 KFRGVRQRP-WGKWAAEIRDP----IRkTRIWLGTFNTAEEAAYVYDSAAIELRG 161
                              89*******.**********7....246*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.8E-30111168IPR001471AP2/ERF domain
PfamPF008475.4E-13112161IPR001471AP2/ERF domain
SMARTSM003802.6E-37112175IPR001471AP2/ERF domain
PROSITE profilePS5103223.327112169IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22112169IPR016177DNA-binding domain
CDDcd000182.03E-32112168No hitNo description
PRINTSPR003671.7E-10113124IPR001471AP2/ERF domain
PRINTSPR003671.7E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDGNGNPVKY RVEKTVTLKQ FKGGLCHNMP KVVRISVTDD DATDSEDEGV FCGGFRRIMK  60
KHVSEVRLER GGFVEDRNEK GGNRFKKVKT GGKKMGQVVE DKQKCGNGSV RKFRGVRQRP  120
WGKWAAEIRD PIRKTRIWLG TFNTAEEAAY VYDSAAIELR GPDALTNFLA PPPRSAVSDY  180
DSTGESEVVP SPTSVLRTRT ATAAADAEKC NGNEDNQLGV EPPTTTENGT MNLLTSTDCC  240
LNGVLDFWSS SSLLTDYYHY GGDDKILPEV KMEGSLDDIS LDFGGDFQAC TWDVNDLLNG  300
AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-20111168159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190997.11e-151PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A328E8E19e-70A0A328E8E1_9ASTE; Uncharacterized protein
TrEMBLA0A484M2109e-70A0A484M210_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-41cytokinin response factor 4