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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000021.1_g00029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 292aa MW: 31057.8 Da PI: 8.0916 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.4 | 6.2e-32 | 69 | 122 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++rY+eClkNhAas+Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+e Itr_sc000021.1_g00029.1 69 RARYRECLKNHAASIGGNVTDGCGEFMPS-GEEGTLEALKCAACNCHRNFHRKER 122 689*************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-23 | 65 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.3E-29 | 70 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.9E-31 | 71 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.961 | 72 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.87E-18 | 205 | 274 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-28 | 212 | 274 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.4E-27 | 213 | 270 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MMALTGEDKE IRMSDSLAGY NPLEDLDQAA AAAAQDLQHG GATNISPAAA CGGGGVFKSK 60 LSTTAGAPRA RYRECLKNHA ASIGGNVTDG CGEFMPSGEE GTLEALKCAA CNCHRNFHRK 120 ERAGGGDGIL VVHPLQLPGA PPMPSPSSIN HHHHRNSPWG APTSLAAQPV KMAFGSGGGG 180 GSAATDSSSE ELNFNAYQSS SAIPSQPGLI LAKKRYRTKF SQEQKDKMLD FAEKLGWRIP 240 REDDTQLQTF CAEVGVKRQV FKVWMHNNKN SAKKNTPQQE QDHQQPPGIA GI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-24 | 214 | 272 | 18 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00238 | DAP | Transfer from AT1G75240 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019174834.1 | 1e-179 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9FRL5 | 2e-63 | ZHD5_ARATH; Zinc-finger homeodomain protein 5 | ||||
TrEMBL | A0A484KRD3 | 1e-110 | A0A484KRD3_9ASTE; Uncharacterized protein | ||||
STRING | XP_009763792.1 | 4e-98 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 5e-63 | homeobox protein 33 |