PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ZF-HD

Protein Properties

Length: 292aa MW: 31057.8 Da PI: 8.0916

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000021.1_g00029.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.4	6.2e-32	69	122	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++rY+eClkNhAas+Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+e Itr_sc000021.1_g00029.1 69 RARYRECLKNHAASIGGNVTDGCGEFMPS-GEEGTLEALKCAACNCHRNFHRKER 122 689***********************9.999******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-23	65	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.3E-29	70	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.9E-31	71	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.961	72	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	9.87E-18	205	274	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-28	212	274	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.4E-27	213	270	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MMALTGEDKE IRMSDSLAGY NPLEDLDQAA AAAAQDLQHG GATNISPAAA CGGGGVFKSK 60 LSTTAGAPRA RYRECLKNHA ASIGGNVTDG CGEFMPSGEE GTLEALKCAA CNCHRNFHRK 120 ERAGGGDGIL VVHPLQLPGA PPMPSPSSIN HHHHRNSPWG APTSLAAQPV KMAFGSGGGG 180 GSAATDSSSE ELNFNAYQSS SAIPSQPGLI LAKKRYRTKF SQEQKDKMLD FAEKLGWRIP 240 REDDTQLQTF CAEVGVKRQV FKVWMHNNKN SAKKNTPQQE QDHQQPPGIA GI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-24	214	272	18	76	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21779177}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00238	DAP	Transfer from AT1G75240	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269\|PubMed:21779177}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174834.1	1e-179	PREDICTED: zinc-finger homeodomain protein 5-like
Swissprot	Q9FRL5	2e-63	ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBL	A0A484KRD3	1e-110	A0A484KRD3_9ASTE; Uncharacterized protein
STRING	XP_009763792.1	4e-98	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	5e-63	homeobox protein 33