PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000019.1_g00039.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 199aa MW: 22346.1 Da PI: 6.4034

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000019.1_g00039.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.8	2.1e-12	21	44	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWt+eLH+rFv+ave+LGG+e Itr_sc000019.1_g00039.1 21 PRLRWTEELHRRFVHAVERLGGEE 44 8*********************97 PP
2	G2-like	48.8	1.6e-15	66	103	15	55
G2-like 15 veaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 v+av+ L +AtPk +l+lm+vk +t++h+kSHLQ+YR Itr_sc000019.1_g00039.1 66 VRAVTDL---LRATPKLVLQLMDVKEITIAHIKSHLQMYRR 103 7788888...89****************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-28	17	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-12	19	45	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-8	21	45	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-5	22	102	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	4.0E-10	74	103	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.55E-12	76	104	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MRVSPENSRV SASGGTKSKA PRLRWTEELH RRFVHAVERL GGEESSGDGF PVGNPEDRVV 60 GVVGSVRAVT DLLRATPKLV LQLMDVKEIT IAHIKSHLQM YRRMKHNKQK MKETRVEQNY 120 VVSNSTPYRE QHEAIPPSFL PAIWQEDEPT MMFMDVVSAS NVQGRNDDYA HEESASMMSF 180 SSDNSESSSD NLSIDLTLG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7450	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	4e-20	G2-like family protein