PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000018.1_g00038.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 467aa    MW: 50819.6 Da    PI: 9.0012
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000018.1_g00038.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.61.3e-13208265460
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklk 60 
                               +++rr++kNRe+A rsR+RK+a++ eLe  v +Le+ N +L ++e+e+ kk  ++l 
  Itr_sc000018.1_g00038.1 208 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEDNARLlREEAEQNKKRLKQLM 265
                              689************************************9953888999888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.0E-13201267No hitNo description
SMARTSM003385.5E-11205269IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53207252IPR004827Basic-leucine zipper domain
PfamPF001704.2E-12207265IPR004827Basic-leucine zipper domain
CDDcd147073.66E-20209256No hitNo description
SuperFamilySSF579596.25E-10209258No hitNo description
PROSITE patternPS000360212227IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MASTSAAPAN PDRPHQSSSP SIHGFGDQLH SDHTRGYGSM NMDEIIKSIY ADTNTLAAAG  60
AADSCSSSGG AGGGNKTVDE VWREIVSGGG GGGGAGGGSR DPEMTLEDFL TKAGAVREED  120
VRVPAIPPPP PPAAAVTPGF KVDAMVTAAN CQFPVAMQTG PGGFAVEPPH MGFGNGVVAI  180
GGNGSSSGGG RGKRRATVEE IPLDKATQQK QRRMIKNRES AARSRERKQA YTVELESLVT  240
QLEEDNARLL REEAEQNKKR LKQLMENLIP VVEKRRPPRV LRRIHSMTWI QTAAYPELGV  300
MRLPNFIYAG LALSAPSGSS CEFSRKSKTC VTVQGEVSRE RILSHEEVTR MFISLTWFQF  360
LQPVLTWHSQ EYNRQTGHMR MVCIKSGGTL KLHTTMTPSM LRQDKDWDYH YIKSWRASGK  420
ITGLDPSVLH PTLEQHEMNG KGYCVQLSRR ILAMMSSIEG CSSVLNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18698SGGGGGGGAGGGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169707.11e-157PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBLA0A328DUS71e-123A0A328DUS7_9ASTE; Uncharacterized protein
TrEMBLA0A484LZ161e-124A0A484LZ16_9ASTE; Uncharacterized protein
STRINGXP_009615514.11e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.16e-34G-box binding factor 4