PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000018.1_g00032.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 386aa MW: 44318.6 Da PI: 8.9737

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000018.1_g00032.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.2	6.8e-16	126	213	1	86
trihelix 1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +Wt+++v+ Li a+ ++e + + + ++++W+ +s +erg++ s++qC++k++ ln+ry++++e+ +++ts+++++ + + Itr_sc000018.1_g00032.1 126 KWTNEMVRILIIAVCYIEAFVLSsiDPVRAGRWRVISGIFAERGYRASAQQCEDKFNVLNRRYRRLNEILGGNTSRVVENPEFMEL 211 7************999887763378*************************************************99999888 PP trihelix 85 le 86 ++ Itr_sc000018.1_g00032.1 212 MD 213 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.8E-13	124	201	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MCSCHSGKKF LPLSKDPPQG LLGWVFTTKD DSVLHGHRSY ESHKVDKDFM DVGNESKSIN 60 TKKDLFKDMD VLGCLQRAKL AGKAGVRHSR TGKATAYWHG NGKTVGGDVT DGADEERAEA 120 VYQRMKWTNE MVRILIIAVC YIEAFVLSSI DPVRAGRWRV ISGIFAERGY RASAQQCEDK 180 FNVLNRRYRR LNEILGGNTS RVVENPEFME LMDLTDEAKE EARRILGSKQ LFYQEMWSYH 240 NQNWSFLPHD PTVKKSVMLA IKGKEKCDAE TPPPGMPTKR MRCQEHGVVD LDRTPDYHNP 300 QSTDVNNMPN TELGSGLQEN QIMSRIFELT ETKLQIQEQI LELKNQLFHK QKFHHEQEKM 360 LAILRSENEA LRLANKHLSL KLRRAK

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MCSCHSGKKF LPLSKDPPQG LLGWVFTTKD DSVLHGHRSY ESHKVDKDFM DVGNESKSIN  60
TKKDLFKDMD VLGCLQRAKL AGKAGVRHSR TGKATAYWHG NGKTVGGDVT DGADEERAEA  120
VYQRMKWTNE MVRILIIAVC YIEAFVLSSI DPVRAGRWRV ISGIFAERGY RASAQQCEDK  180
FNVLNRRYRR LNEILGGNTS RVVENPEFME LMDLTDEAKE EARRILGSKQ LFYQEMWSYH  240
NQNWSFLPHD PTVKKSVMLA IKGKEKCDAE TPPPGMPTKR MRCQEHGVVD LDRTPDYHNP  300
QSTDVNNMPN TELGSGLQEN QIMSRIFELT ETKLQIQEQI LELKNQLFHK QKFHHEQEKM  360
LAILRSENEA LRLANKHLSL KLRRAK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12585	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	4e-56