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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc000018.1_g00020.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
NAC |
| Protein Properties |
Length: 197aa MW: 22600.1 Da PI: 4.8285 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000018.1_g00020.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 121.3 | 9e-38 | 9 | 129 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r + +r+t++g+Wk
Itr_sc000018.1_g00020.1 9 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGRKWYFYSRRTS--------RRMTENGFWKPL 85
79*************************999.99**************977778899******9854........789********* PP
NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
g +++++s+ g++vg+kk +fy g+ p+g ktdWvm+eyrl
Itr_sc000018.1_g00020.1 86 GVEEPIFSSsgAGQKVGMKKYYAFYVGEPPEGDKTDWVMQEYRL 129
********9888899***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MGDNNNVNLP PGFRFYPTDE ELVVHFLHRK AALLPCHPDV IPDLDLYPYD PWDLDGKAMA 60
EGRKWYFYSR RTSRRMTENG FWKPLGVEEP IFSSSGAGQK VGMKKYYAFY VGEPPEGDKT 120
DWVMQEYRLS DYSASTSSRS SSRRNRHSKI DYSKWVICRV FEGNYDNGGG GDDGTELSCL 180
DEVFLSLDDL DEISLPH
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-39 | 5 | 162 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-39 | 5 | 162 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-39 | 5 | 162 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-39 | 5 | 162 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-39 | 5 | 162 | 13 | 164 | NAC domain-containing protein 19 |
| 4dul_B | 1e-39 | 5 | 162 | 13 | 164 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
