PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000016.1_g00066.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 341aa    MW: 38727 Da    PI: 9.3203
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000016.1_g00066.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.29.4e-1841134186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkr.....tsessst 78 
                              +W+++e+ aLi+a+r+++ +lrrg+l++++W+ev++ +         +++ qC++k+e+l+kry+++ +++ +      + +  st
  Itr_sc000016.1_g00066.1  41 CWSHDETVALIDAYRDKWYSLRRGNLRANHWQEVAEDIavrCPVDPPKTSMQCRHKMEKLRKRYRAEIQRAASYggggaSRRYCST 126
                              8************************************96433344589*****************998887653111123444566 PP

                 trihelix  79 cpyfdqle 86 
                              + +f++++
  Itr_sc000016.1_g00066.1 127 WIHFKRMD 134
                              77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1940136No hitNo description
PROSITE profilePS500906.44642101IPR017877Myb-like domain
SMARTSM005958.4E-1049141IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAASPTRSNQ EQCTTPPEIP FSNVTVASHG AASSRRLPPP CWSHDETVAL IDAYRDKWYS  60
LRRGNLRANH WQEVAEDIAV RCPVDPPKTS MQCRHKMEKL RKRYRAEIQR AASYGGGGAS  120
RRYCSTWIHF KRMDTMERGP DAASPPQDEE EFEDEQEDFK QNSVKHIGDI YSQHNLNSNK  180
RNSFQESMSN GGAGFRIRIP SARPIPTPPM AKPYSGKIDE MLIQFPNPNP NHGSSRSYRG  240
VMKKEKASSL GKRIVEEAVE KRNGDPIAEA VAAIKMLGEG LVRIENMKMD VARELEQMKM  300
EMEMKKTEMI LESQQKIVEA FAMSFSEKNP KKARRMPPPE C
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159269.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A3Q7EJF01e-139A0A3Q7EJF0_SOLLC; Uncharacterized protein
STRINGSolyc01g088820.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-56Trihelix family protein