PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000016.1_g00032.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 389aa MW: 42617.4 Da PI: 6.6961

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000016.1_g00032.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.7e-18	213	267	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F++n++++ +++ LAk+l+L rqV vWFqNrRa+ k Itr_sc000016.1_g00032.1 213 RKKLRLSKQQSAFLEESFKENHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 267 788899***********************************************98 PP
2	HD-ZIP_I/II	124.2	6e-40	213	303	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+++Lkr++++l+een+rL+ke +e Itr_sc000016.1_g00032.1 213 RKKLRLSKQQSAFLEESFKENHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEIDCDYLKRCCETLTEENRRLHKELQE 298 69************************************************************************************ PP HD-ZIP_I/II 87 Lreelk 92 Lr +lk Itr_sc000016.1_g00032.1 299 LR-ALK 303 *9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-19	187	270	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-18	205	270	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	209	269	IPR001356	Homeobox domain
SMART	SM00389	1.6E-15	211	273	IPR001356	Homeobox domain
CDD	cd00086	1.40E-16	213	270	No hit	No description
Pfam	PF00046	1.7E-15	213	267	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	244	267	IPR017970	Homeobox, conserved site
SMART	SM00340	3.4E-24	269	312	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.2E-10	269	303	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MIRNMELGLS LGDSSSKPAE DHHNHHRPRT VSSKKDGLNF CMALGILSSA DIEERPGNAR 60 KPPKQNDSDD HISNDNDDQT ASEEEEEEEG GHCRALVPMR ASLQLDLLPL APVPVSRHHP 120 FPWSSDNGSS ENGSSGNMEL QTTARGFDVS RLPKTAAAAT EEVSSSFCME SSIFKRGGSG 180 MLSICEAAGE AAERACSRAA SDEDENNGVN NARKKLRLSK QQSAFLEESF KENHTLNPKQ 240 KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEIDCDYLKR CCETLTEENR RLHKELQELR 300 ALKTSNPFYS NLPATTLTMC PSCERVATTT TTTTAATVTT AIATISDSHP TATATVATAT 360 NPESIPKAIP FLTRAGSFPF TTSHNHAPS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MIRNMELGLS LGDSSSKPAE DHHNHHRPRT VSSKKDGLNF CMALGILSSA DIEERPGNAR  60
KPPKQNDSDD HISNDNDDQT ASEEEEEEEG GHCRALVPMR ASLQLDLLPL APVPVSRHHP  120
FPWSSDNGSS ENGSSGNMEL QTTARGFDVS RLPKTAAAAT EEVSSSFCME SSIFKRGGSG  180
MLSICEAAGE AAERACSRAA SDEDENNGVN NARKKLRLSK QQSAFLEESF KENHTLNPKQ  240
KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEIDCDYLKR CCETLTEENR RLHKELQELR  300
ALKTSNPFYS NLPATTLTMC PSCERVATTT TTTTAATVTT AIATISDSHP TATATVATAT  360
NPESIPKAIP FLTRAGSFPF TTSHNHAPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	269	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019158786.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
Swissprot	A2YW03	3e-77	HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBL	A0A2G9I609	1e-115	A0A2G9I609_9LAMI; Transcription factor HEX
STRING	XP_009617361.1	1e-114	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-55	homeobox from Arabidopsis thaliana