PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000014.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 424aa    MW: 47853.8 Da    PI: 10.5415
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000014.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.4e-141496798
                             .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                       B3  7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                             p + + ++ + +p  f++++ +g+ +   +  +  +  rsW+vk+  ++++   ++++GW++F  +ngL++gDfvvF+ +g++ f   
  Itr_sc000014.1_g00019.1 14 PIHQGFKNGVNIPTAFLAKYlKGQAP---KFAILRRGDRSWRVKI--SGGR---MIADGWEKFGAENGLNVGDFVVFRKEGDRVF--D 91
                             445566667***********755544...5888899*********..4444...89**********************6665555..7 PP

                             EEEE- CS
                       B3 94 vkvfr 98
                             v+vf+
  Itr_sc000014.1_g00019.1 92 VSVFE 96
                             87776 PP
2B362.47.3e-20217305394
                              EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                +++s+ lk++ l+lp +fa ++g++ +e+++++l+d + rsW+v +   + ++ + l++GW++F  angLkegD   F+l++ s
  Itr_sc000014.1_g00019.1 217 VSTIKSYCLKRQELYLPMEFAMSNGLVAKEKREMILRDDKERSWSVVM--GRVGSNFSLRQGWQSFQMANGLKEGDAYKFELIK-S 299
                              56789*******************************************..999999**************************98.6 PP

                              EE..EE CS
                       B3  89 efelvv 94 
                              ++++  
  Itr_sc000014.1_g00019.1 300 GKTPIA 305
                              665655 PP
3B350.83.1e-16325413495
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                              ++++++ l++ +l+lp +fa+++g+ ++e+++++l+d + rsW v l   + + ++ l +GW+ F  a+gLkegD   F+l++ s+
  Itr_sc000014.1_g00019.1 325 ATIKPYCLRKPQLYLPLEFARSNGLFSAEKREMILRDDKERSWPVVL--GRMGHHIGLLRGWQAFQMAKGLKEGDAYKFELIK-SG 407
                              56789999999************99999999****************..88888899999*********************98.66 PP

                              E..EEE CS
                       B3  90 felvvk 95 
                              +++  k
  Itr_sc000014.1_g00019.1 408 KKPIAK 413
                              666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-204100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-186104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76898IPR003340B3 DNA binding domain
CDDcd100173.29E-15995No hitNo description
SMARTSM010195.5E-111198IPR003340B3 DNA binding domain
PfamPF023621.6E-111294IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-19210308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18211307IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-15214304No hitNo description
PROSITE profilePS5086313.86215310IPR003340B3 DNA binding domain
SMARTSM010196.1E-19215311IPR003340B3 DNA binding domain
PfamPF023623.0E-18216307IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-19314415IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-19316415IPR015300DNA-binding pseudobarrel domain
CDDcd100178.16E-16321411No hitNo description
PROSITE profilePS5086312.393322417IPR003340B3 DNA binding domain
SMARTSM010197.2E-18323418IPR003340B3 DNA binding domain
PfamPF023626.5E-15325415IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MKTIPPKNPH FFKPIHQGFK NGVNIPTAFL AKYLKGQAPK FAILRRGDRS WRVKISGGRM  60
IADGWEKFGA ENGLNVGDFV VFRKEGDRVF DVSVFEPSLC ERDWPLPHGG CPVTQPSNNF  120
CSAGQNPHRG PRGWAKFDYP TRTRALRQNG DTQGWQLRPG LWVTSYGSRV QPPSSGNLIW  180
LSGSGSPRTC PSPWATRRQP IARDTTSTLP ADHPYFVSTI KSYCLKRQEL YLPMEFAMSN  240
GLVAKEKREM ILRDDKERSW SVVMGRVGSN FSLRQGWQSF QMANGLKEGD AYKFELIKSG  300
KTPIAKFHSL GTTSSSSAEN PHFVATIKPY CLRKPQLYLP LEFARSNGLF SAEKREMILR  360
DDKERSWPVV LGRMGHHIGL LRGWQAFQMA KGLKEGDAYK FELIKSGKKP IAKFHSGHFS  420
GEED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176566.11e-135PREDICTED: B3 domain-containing protein REM17-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-37B3 family protein