PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000012.1_g00024.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 265aa    MW: 29423.6 Da    PI: 6.5414
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000012.1_g00024.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF351.9e-1114431544
                             HHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                   SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstg 44
                             +R++ ++KKAeE+S LC+ e+ ++i+s+t 
  Itr_sc000012.1_g00024.1 14 RRKEALFKKAEEISMLCGSEIGIVIVSPTE 43
                             69*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-4751IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-111379IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.9331444IPR002100Transcription factor, MADS-box
PfamPF003194.1E-101443IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTMQAVVKKR KIERRKEALF KKAEEISMLC GSEIGIVIVS PTERDPIIWP EVEAMTNIFS  60
AFMEVPEEER VKRMVFHKEY MRVKVNEGIG KMRRLEEEVE RKEMNVLMKE VIAGRRNLTE  120
MDARQLKGLY ALADDKMVEL EKRKQDFPAT ADDGGAARPP RRREWNLAPV AADSGGADGG  180
GSYYVPQPPA PAAGELLPAT WFVPNMAAPP PHGGGGGGGE GSYQQQMFFS LPTNNGGGAN  240
SASAYHHQVP NLNQDWIYNF FPGSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155933.11e-92PREDICTED: agamous-like MADS-box protein AGL86
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.14e-17AGAMOUS-like 92