PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000011.1_g00140.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 520aa    MW: 56801.2 Da    PI: 7.1044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000011.1_g00140.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.3e-16340386455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  ErrRRdriN+++  L+ellP++      K +Ka++L +A+eY+ksLq
  Itr_sc000011.1_g00140.1 340 VHNLSERRRRDRINEKMRALQELLPHS-----NKTDKASMLDEAIEYLKSLQ 386
                              6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-20333401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.133336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.53E-18339390No hitNo description
Gene3DG3DSA:4.10.280.103.8E-19340394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-13340386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MNPCLPEWNI EAEVPLANQK KPVGLDHDLV ELLWRNGQVV LHSQTHRKSG FEGNESRQLQ  60
KHDQSSLRDV SLFGNPSSFI QDDETASWLN CPVDDSFEKE FCAPFLSEIP PVHHTVGTDK  120
GGIRQVEDSK IFKVGSSEVS HSHVHSGVNL NPMPPPGTQT LSSLHQHQRR DCNFPEGGGV  180
SFGASLKANN LRSSNGQFGA KGHGDIRECS GMTVGSSHCG SNQVAIDAAF SRNSCSGNGG  240
DRGLSAAVKK DRVEKVSISP QTETAEEETA VTSSSGRSGS SFARTCNQSA GTISHGQKRK  300
VRDGEESECQ REEAAEFESG NGTKSTQKSG TPRRSRAAEV HNLSERRRRD RINEKMRALQ  360
ELLPHSNKTD KASMLDEAIE YLKSLQLQLQ MMWMGSGMAS MMFPGMQHYM SRMGMGMVPP  420
ALPNMHSAMH LPRPPMVDHA AATMASTQNQ AALCQNSMLN PINYQNQLQN PNFAEQFASY  480
MGFHPMQNPS QAVNMFNLGS HASQPNSMFN PPTNGNGPSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344349ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6054410.0KJ605441.1 Ipomoea nil cultivar Violet PIF4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193873.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_019193874.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_019193875.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_019193876.10.0PREDICTED: transcription factor PIF4-like
TrEMBLA0A0D3MTK40.0A0A0D3MTK4_IPONI; PIF4
STRINGXP_009602219.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.23e-47phytochrome interacting factor 4