PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000011.1_g00032.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 711aa    MW: 80321.3 Da    PI: 5.6728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000011.1_g00032.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14262367198
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE....EEETTE.EEE-TTHHHHHHHHT- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliy..rkksgr.yvltkGWkeFvkangL 74 
                              f kvlt+sd++++  l++ ++ a ++       +  ++ s++l+ +d +   + +   ++y  ++++ r  +ltkGWk Fvk++gL
  Itr_sc000011.1_g00032.1 262 FSKVLTTSDTHSNWGLCINRRDAINCfppldttQ--EKPSQKLIARDIHDkpQAYMDSHRYtsTGHPPRhLLLTKGWKAFVKSKGL 345
                              88*********************999****9643..344569999**9996644444454444444444699************** PP

                              -TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  75 kegDfvvFkldgrsefelvvkvfr 98 
                               +gD+vvF   + ++++l+v+v+r
  Itr_sc000011.1_g00032.1 346 VAGDSVVFL--RGENGQLYVGVRR 367
                              *********..4489999****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-25253373IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-20257368IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-16260367No hitNo description
PfamPF023623.6E-11262367IPR003340B3 DNA binding domain
SMARTSM010193.8E-9262369IPR003340B3 DNA binding domain
PROSITE profilePS508639.291332369IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MLLFNVHQRM KQCEVFSRPA VFNSEVRRRQ LKMEPRLEDH IPLILKMELR GTVLVVETHV  60
SSSTPELIDF DVCPNLSLFT SSRALKIWNV KLQSLSACTS FSIRSALELS ITHKVSFRLL  120
QLSLDREVTW IMDDQVGSSQ HQQLVERHCF DQVADNLYTE LWKACADPLM CVPTCGERAF  180
YFPGVHMDQL DNSTNPEVID QEQISNLPPK VLCRVVNVRL LANQETDEAY AQITLLPEPY  240
ETGVNTFDHC LHESPRSQFH SFSKVLTTSD THSNWGLCIN RRDAINCFPP LDTTQEKPSQ  300
KLIARDIHDK PQAYMDSHRY TSTGHPPRHL LLTKGWKAFV KSKGLVAGDS VVFLRGENGQ  360
LYVGVRRLVY QQSCVGLSRT SRQTKQVVGA VISHAIATQT LFVVYYEART SQSIISLNKY  420
LQSVASGLNL SVYYEGEGYH HRSEGNDEQM EEADGTIYPL PQPTTISSEV DWEGLYDILQ  480
SPGPMELDHE GGTGENDERF NNLGNQDLSP ILQRHGEESG MGAIPIAIQE GSLQVMPISS  540
IPSQIPYGGP GCGDEKIPWE GYLVAQRCIP TLNRVISRYP DSLLGFKPWS NAVKTTFLEV  600
LAEVVYLLER FTVESLGRSR DEFNMAKQFL WDLKHSGIDV IWVETRLVQI DEALKMQSLM  660
QKQKELMLKY EEACSALGKV EEELGSVNKQ LEELSSHNHP ATNKPILEGL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A9e-7215343715301Auxin response factor 1
4ldw_A9e-7215343715301Auxin response factor 1
4ldw_B9e-7215343715301Auxin response factor 1
4ldy_A8e-7215343715301Auxin response factor 1
4ldy_B8e-7215343715301Auxin response factor 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193209.10.0PREDICTED: auxin response factor 11-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14681810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.12e-84auxin response factor 11