PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000011.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 680aa    MW: 75291 Da    PI: 6.9645
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000011.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24124225199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD+
  Itr_sc000011.1_g00017.1 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDS 207
                              89****************************986445444..8999***************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              +vF   + +++el+v+++r+
  Itr_sc000011.1_g00017.1 208 IVFL--RAENGELFVGIRRA 225
                              ****..449999******97 PP
2Auxin_resp115.54.6e-38292375183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              aa+ a+++++FevvY+Pra+t+eFvvk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+  dp++WpnS+Wr+L+
  Itr_sc000011.1_g00017.1 292 AATLAANAQPFEVVYYPRACTPEFVVKASAVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVDDPIHWPNSPWRLLQ 375
                              68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-38115228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-30117230IPR015300DNA-binding pseudobarrel domain
CDDcd100177.08E-22123224No hitNo description
PfamPF023628.0E-23124225IPR003340B3 DNA binding domain
SMARTSM010196.0E-23124226IPR003340B3 DNA binding domain
PROSITE profilePS5086313.592124226IPR003340B3 DNA binding domain
PfamPF065072.4E-32292375IPR010525Auxin response factor
PROSITE profilePS5174521.718594674IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MIDVMSSVNK PLNEVERCLD SQLWHACAGG MVQMPSVNSK VFYFPQGHAE HAQKALDFGG  60
FPRIPPLVLC RVASIRYLAD FESDEVYAKI RLVPLKGNEC CDGDMDGGIP GFDKNENQEK  120
PNSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTILAKDVH GETWKFRHIY  180
RGTPRRHLLT TGWSNFVNQK KLVAGDSIVF LRAENGELFV GIRRAKRGIG NGPEATSGWN  240
TGAGTYTSSL YQGFSGFFSD DEKKFMRNGQ GGNCDEGLRG RSKVRTESVV EAATLAANAQ  300
PFEVVYYPRA CTPEFVVKAS AVRAAMRIQW CSGMRFKMPF ETEDSSRISW FMGTISSVQV  360
DDPIHWPNSP WRLLQVAWDE PDLLQNVKRV NPWLVELVAN MPPIHLSPFS PPRKKLRLPQ  420
PLEFPTSGQF SLPSLLSNPL IPSSPLSCVS DNIPAGIQGA RHAQFGLSLT DLHFNKLQGG  480
LFPFGYREFD RTISPKTPSG SLKASSENDD NLSCLLTIGN GSPNLKQNNE KKTPTPKLML  540
FGKAILTEQQ MSQSCSGETV NLSDGSGSAL LHSGPTENSR DEPFPWYKDE KSETGHCKVF  600
MESDDVGRTL DLSALGSYEE LYRKLASMFG IQRSEMLSNV LYQDTTGSVR HTGDEPFSEF  660
IKTARRLTIL SDSSSDNVGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-821939651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194636.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1J6K8F50.0A0A1J6K8F5_NICAT; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]