PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000010.1_g00057.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 271aa    MW: 30253.1 Da    PI: 8.1081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000010.1_g00057.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.1e-1580132155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              ++ +hn+ Er RR+++N  f+ Lr+llP+ +   ++ ++s  +++ ++v+YI +Lq
  Itr_sc000010.1_g00057.1  80 KKLSHNASERDRRKKMNGLFSSLRSLLPPsD---QKARMSIPTTVSRVVKYIPELQ 132
                              6789*************************66...9999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.95179131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-1580152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1680150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-1280132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.59E-1380136No hitNo description
SMARTSM003535.0E-1185137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGWSIDDYIS HEQFGTDLYS NAASDTSPHA PPQHFLSVSL PSSPLPPAME RCDSLKFDGG  60
STDIGSGGGG GGEAAAGMVK KLSHNASERD RRKKMNGLFS SLRSLLPPSD QKARMSIPTT  120
VSRVVKYIPE LQKELERLQK KKQELTSRVN SWQKLSASPP EFNKRRRVVG GHPHHRQSYL  180
SASQVGERDI VIQICSKKGA KNLFADALSC LEQEGLLLLD SSTFQTSEDR VNFYTLHLQV  240
QGIEVMEVDK LKEKLLSYFN EEQQNFYHDT N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163167KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186357.11e-162PREDICTED: transcription factor ORG3-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56980.17e-16bHLH family protein