PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000006.1_g00061.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 546aa    MW: 59139.1 Da    PI: 6.9725
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000006.1_g00061.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.34e-18169255186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                              +W++  + +L+ea++e+  +l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk ++++++++   s s++p+++q
  Itr_sc000006.1_g00061.1 169 EWSDTAIACLLEAYTEKFMQLNRGNLRGRDWEEVAAMVsdRCEKQTKSVEQCKNKVDNLKKRYKLERHRMSNG-GISASHWPWYKQ 253
                              5*************************************88889999*************************99.566679****** PP

                 trihelix  85 le 86 
                              +e
  Itr_sc000006.1_g00061.1 254 ME 255
                              *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.0E-21167257No hitNo description
Gene3DG3DSA:3.40.1160.101.4E-71299539IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.244305540IPR015963Uridylate kinase, bacteria
SuperFamilySSF536337.46E-57306539IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.47E-100308540No hitNo description
PfamPF006962.8E-24309519IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MASCDDDFPL LGDDNATPTA TTPNANPNFH HHHHHQAFSS HRFKASQIHA PPIHGGSPKD  60
ISGEDDVVSP EGEGYSDGGA FCSQPDPKDS NSSSYHVVGM NPYENDSNPY ETEPDPSRSR  120
ASAGNGKRAE QDDISENGTP YSYKKSKLNS SVASSGGGGS GEYRKDREEW SDTAIACLLE  180
AYTEKFMQLN RGNLRGRDWE EVAAMVSDRC EKQTKSVEQC KNKVDNLKKR YKLERHRMSN  240
GGISASHWPW YKQMEQIVGN SLLAKAVVEE EKSGNLARPA KRFGTPIAGP GGQINNMKLK  300
SSGGPRWRRV VFKISGAALA GTTQNNIDPK VAMLIAREIS IACRVGVEVA VVVGGRNFFC  360
GDSWVTSTGL DRCTAYQIGM MATLMNSMLL QSALEKLGVQ TRLQSAFSMP EVAEPYNRQR  420
AIRHLEKGRV VIFGGIGAGT GISLFTTDTA AALRASEIHA DAMLKGTNVE GVYVCDSRSN  480
NLAAEHISYR DLASKGAAPI DMMAVNCCEE NGIPVVIFNL HDHGNISRAL TGEPVGTLID  540
QTGRVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A3e-5830753950279Uridylate kinase
3nwy_B3e-5830753950279Uridylate kinase
3nwy_C3e-5830753950279Uridylate kinase
3nwy_D3e-5830753950279Uridylate kinase
3nwy_E3e-5830753950279Uridylate kinase
3nwy_F3e-5830753950279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187047.10.0PREDICTED: uncharacterized protein LOC109181640
TrEMBLA0A484LG190.0A0A484LG19_9ASTE; Uncharacterized protein
STRINGXP_009802965.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein