PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000003.1_g00045.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 281aa    MW: 29664.1 Da    PI: 8.0805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000003.1_g00045.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05166188123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+ksF++   L  H r+H
  Itr_sc000003.1_g00045.1 166 HECNICHKSFPTGQALGGHKRRH 188
                              78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-8101124No hitNo description
PfamPF139123.9E-11102126IPR007087Zinc finger, C2H2
SMARTSM003550.032102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SuperFamilySSF576672.35E-8161188No hitNo description
PfamPF139124.1E-13165190IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452166188IPR007087Zinc finger, C2H2
SMARTSM003550.045166188IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MALEAMKSAG VVTPPLPPVP GVEVDDVNGF KKKRTKRPRG DETPAPPTEE ERYLALCLIM  60
LARGEDPSRQ RDAPPEAKVV VKEKETLPPP PPAAEAPQEQ LYKCSVCNKC FHSYQALGGH  120
KASHRKLNSA TASDDNNNPS PSNSAAAGGG GGASHSSVLN PTGRAHECNI CHKSFPTGQA  180
LGGHKRRHYE GNLGGSAANR DGGSAPSGSA VTSSEGGVSS HAPRPFDLNL LPSTELQLGL  240
SVDCSVKSQR PGDQEVESPM PAKKPRLSFP FDWDLRPNSN S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169140.11e-150PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A484KQZ59e-88A0A484KQZ5_9ASTE; Uncharacterized protein
STRINGXP_009772006.16e-79(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.19e-40salt tolerance zinc finger