PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000002.1_g00059.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ZF-HD

Protein Properties

Length: 326aa MW: 34693.7 Da PI: 8.3434

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000002.1_g00059.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.7	1.4e-33	62	119	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+Y+eClkNhAa+lGghavDGCgEfm+s++++ +++++lkCaACgCHRnFHRre+ e Itr_sc000002.1_g00059.1 62 VVHYRECLKNHAAALGGHAVDGCGEFMASPTANpADPTSLKCAACGCHRNFHRREPPE 119 589****************************9******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.1E-28	63	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-23	63	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.5E-30	64	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.137	65	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.65E-17	197	269	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-28	199	270	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.1E-26	208	265	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MEISSSCNTA VKTPEADSET PTAAARIYPA KPLSYSSNGV LKRLNHARYG GGFGSNGHHA 60 VVVHYRECLK NHAAALGGHA VDGCGEFMAS PTANPADPTS LKCAACGCHR NFHRREPPEE 120 ARSPHHDAVA ALEYQPHHRH HPPPPPPPQG GCHSSPNSSS PPPISSAYYP SAAPHVLLAL 180 GTGLSALQTD SVTANHTSVT PPSNPNGRKR FRTKFTQDQK DKMLEFADKI GWKILKRDED 240 LINEFCAKIG VERGVLKVWM HNNKNTAGKK DQLPSAAAAA VDGGDFDLVT ATAAAAACQF 300 DVKNENNSRS VPTAPLTATN GSFYSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-22	209	267	18	76	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185880.1	1e-157	PREDICTED: zinc-finger homeodomain protein 9-like isoform X1
Swissprot	Q9LHF0	3e-64	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A328DMZ5	1e-119	A0A328DMZ5_9ASTE; Uncharacterized protein
STRING	XP_009620291.1	4e-94	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	5e-66	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]