PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000002.1_g00059.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ZF-HD
Protein Properties Length: 326aa    MW: 34693.7 Da    PI: 8.3434
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000002.1_g00059.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.71.4e-3362119359
              ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                               v+Y+eClkNhAa+lGghavDGCgEfm+s++++ +++++lkCaACgCHRnFHRre+ e
  Itr_sc000002.1_g00059.1  62 VVHYRECLKNHAAALGGHAVDGCGEFMASPTANpADPTSLKCAACGCHRNFHRREPPE 119
                              589******************************9********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.1E-2863117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2363124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-3064116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.13765116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.65E-17197269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-28199270IPR009057Homeodomain-like
TIGRFAMsTIGR015654.1E-26208265IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEISSSCNTA VKTPEADSET PTAAARIYPA KPLSYSSNGV LKRLNHARYG GGFGSNGHHA  60
VVVHYRECLK NHAAALGGHA VDGCGEFMAS PTANPADPTS LKCAACGCHR NFHRREPPEE  120
ARSPHHDAVA ALEYQPHHRH HPPPPPPPQG GCHSSPNSSS PPPISSAYYP SAAPHVLLAL  180
GTGLSALQTD SVTANHTSVT PPSNPNGRKR FRTKFTQDQK DKMLEFADKI GWKILKRDED  240
LINEFCAKIG VERGVLKVWM HNNKNTAGKK DQLPSAAAAA VDGGDFDLVT ATAAAAACQF  300
DVKNENNSRS VPTAPLTATN GSFYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-222092671876ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185880.11e-157PREDICTED: zinc-finger homeodomain protein 9-like isoform X1
SwissprotQ9LHF03e-64ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A328DMZ51e-119A0A328DMZ5_9ASTE; Uncharacterized protein
STRINGXP_009620291.14e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-66homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]