PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000002.1_g00029.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 210aa MW: 23582.2 Da PI: 6.8499

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000002.1_g00029.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.6	4.9e-39	10	111	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqq 85 aCaaCk++rrkC++dCvlapyfp++qpk+f+n+h+lFG+sn+lk+lk++++++ + dam+s+++e+++r r Pv+G+v+ i l++ Itr_sc000002.1_g00029.1 10 ACAACKHQRRKCSSDCVLAPYFPSTQPKTFQNAHRLFGVSNILKTLKHIDDDDkKADAMKSIIFESDMRHRFPVHGCVKYIYYLSH 95 7**********************************************7666499************************** PP DUF260 86 qleqlkaelallkeel 101 +++q+++el ++++l Itr_sc000002.1_g00029.1 96 RVSQAEEELRCVRAQL 111 *******9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.066	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-37	10	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MTVKGGTSQA CAACKHQRRK CSSDCVLAPY FPSTQPKTFQ NAHRLFGVSN ILKTLKHIDD 60 DDKKADAMKS IIFESDMRHR FPVHGCVKYI YYLSHRVSQA EEELRCVRAQ LDRCREQLLK 120 SMNSNDDNSN YNCDTGYAWT DESKALSSFD PISSAEYNDL SIFPHENFPD YYGLIPGEQP 180 STKEASNSSS VSSSQTDLRN AAAGLSLTRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-24	6	113	7	113	LOB family transfactor Ramosa2.1
5ly0_B	6e-24	6	113	7	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185512.1	1e-109	PREDICTED: LOB domain-containing protein 27-like isoform X2
Swissprot	Q9STS6	1e-40	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A1S3X592	2e-54	A0A1S3X592_TOBAC; LOB domain-containing protein 2-like
STRING	XP_009612871.1	2e-55	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-38	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]