PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_9_00430
Common NameCHLNCDRAFT_145623
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 357aa    MW: 37704.6 Da    PI: 8.036
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_9_00430genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP77.81.7e-2431102677
                     T-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   6 gCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      C+  l +a+ +h+r++vC  h+ a +v+++g+ qrfCqqC+rfhel+ f  + rsCr++La+h errr+++
  IGS.gm_9_00430  31 VCQCSLRDARVFHQRYHVCPEHATADQVVLHGVLQRFCQQCGRFHELERFAPSMRSCRQQLARHAERRRHRR 102
                     48889***************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.2E-202488IPR004333Transcription factor, SBP-box
PROSITE profilePS5114121.72626101IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-2128101IPR004333Transcription factor, SBP-box
PfamPF031104.0E-2331100IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MQQEGLAALQ LGALDAPRPY QSARKGPACA VCQCSLRDAR VFHQRYHVCP EHATADQVVL  60
HGVLQRFCQQ CGRFHELERF APSMRSCRQQ LARHAERRRH RRAVAAAAKA AARTAPPSGA  120
HLSAPGGAVM PAPPTAAAPG SGLPLPDAKR PRLEGPEAQL AALLQQQAAA AGVKLEQADA  180
GGTGSGRQQD GSCASVQSTH STHINNTADG LDALLAAAQE EEQEVGQQAR AAAAATKPAK  240
PAAAAWPPAA APPPAPPPPP PQWAPTAPAL PPLPLPETWQ PAQPAWQQQQ WDQPRFPPAW  300
EAPPALAQAQ AQAQAGWELP HFPPAWEVPQ TIPLYLPAFR VTYAYSGPEA VMWQDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-2032991683squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005848195.10.0hypothetical protein CHLNCDRAFT_145623
TrEMBLE1ZDV60.0E1ZDV6_CHLVA; Uncharacterized protein
STRINGXP_005848195.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.26e-16squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]