PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.2	1.4e-15	34	64	1	31
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31 C+ Cg+tkTp+WR+gp g ktLCnaCG++ IGS.gm_5_00447 34 CTKCGATKTPQWREGPFGAKTLCNACGVKRT 64 ***************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	4.8E-7	28	77	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	9.03E-11	31	66	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.5E-11	33	62	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	2.8E-13	34	62	IPR000679	Zinc finger, GATA-type
CDD	cd00202	5.00E-11	34	79	No hit	No description
PROSITE profile	PS50114	11.095	34	61	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MTELAGPGAA HQSSPFDDEE FAFAHGAING VKCCTKCGAT KTPQWREGPF GAKTLCNACG 60 VKRTRKLRAE QEGAKRRRLS ASPAPPPQAK HAFAAPKYGA SRGAQYSQDA PTMDSYGSLE 120 PDSEAWGLPA AHGTRRPPRR AAEEAAFRTA RYARTGEWAE AQAHCEEAPR AATPSSSSDG 180 YSQPSSSCPE EVSWPPAAAG GAPRGSDCYA AINLMTMSAT QTAAAHAAAS CGAAPAAAAH 240 PCPAPAACPA SPASAALHFD AEQFNHDSLV ALAARYGAGA GAPPHHRVAP VTLSDLSRCL 300 PPAKVLELVR LNQELEVAVH EAHAASAAVA AVAQVLACKQ AAALRSRDVA GAATKRLRRF 360 MAELDTQFGI QSKFGAGRPP LSPTKPTGAA ALASPAKPLM AAARSPAAPV LAPLLPAAPA 420 LQARTL*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MTELAGPGAA HQSSPFDDEE FAFAHGAING VKCCTKCGAT KTPQWREGPF GAKTLCNACG  60
VKRTRKLRAE QEGAKRRRLS ASPAPPPQAK HAFAAPKYGA SRGAQYSQDA PTMDSYGSLE  120
PDSEAWGLPA AHGTRRPPRR AAEEAAFRTA RYARTGEWAE AQAHCEEAPR AATPSSSSDG  180
YSQPSSSCPE EVSWPPAAAG GAPRGSDCYA AINLMTMSAT QTAAAHAAAS CGAAPAAAAH  240
PCPAPAACPA SPASAALHFD AEQFNHDSLV ALAARYGAGA GAPPHHRVAP VTLSDLSRCL  300
PPAKVLELVR LNQELEVAVH EAHAASAAVA AVAQVLACKQ AAALRSRDVA GAATKRLRRF  360
MAELDTQFGI QSKFGAGRPP LSPTKPTGAA ALASPAKPLM AAARSPAAPV LAPLLPAAPA  420
LQARTL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	78	KRRRL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00554	DAP	Transfer from AT5G49300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005849623.1	0.0	hypothetical protein CHLNCDRAFT_143118
TrEMBL	E1Z9H7	0.0	E1Z9H7_CHLVA; Uncharacterized protein
STRING	XP_005849623.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP220	14	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36240.1	5e-12	GATA transcription factor 7

Link Out ? help Back to Top
Entrez Gene	17357301

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]