PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

IGS.gm_38_00048

Common Name

CHLNCDRAFT_141785

Organism

Chlorella variabilis NC64A

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 294aa MW: 30631.9 Da PI: 8.8834

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_38_00048	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82.9	3.5e-26	66	120	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+ W+peLH++F av++LGG+ AtPk ile+m+ kgL+l++vkSHLQk+Rl IGS.gm_38_00048 66 RPRMLWSPELHKEFEAAVHKLGGPFSATPKCILEMMGTKGLSLTNVKSHLQKFRL 120 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-23	65	123	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-13	65	122	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-21	67	121	IPR006447	Myb domain, plants
Pfam	PF00249	8.1E-8	68	118	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MPRRRAQRIT EQAEPSTSSA CPSSDAETLD EGRGADSGTT DEPLSQPAEP SSPAAPRCGG 60 GTLRGRPRML WSPELHKEFE AAVHKLGGPF SATPKCILEM MGTKGLSLTN VKSHLQKFRL 120 KAHKRAQLQA AEAEATAVAV AGSPRPTKAG RAGGGVASTG SLPAGLSAAV LPNNMVPITT 180 AGAVAAGQQG EVSFADPELA AQAAAWQRKR LGLVAAIQGA LQACQSPTAH LSQHHEQAVV 240 QWQLENLHCL HVLHSLHMMQ MRQHLAAAAC LKEKAQQAAA NAPLPPEALQ LVT*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005842930.1	0.0	hypothetical protein CHLNCDRAFT_141785
TrEMBL	E1ZTL4	0.0	E1ZTL4_CHLVA; Uncharacterized protein
STRING	XP_005842930.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP111	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	5e-17	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	17350288

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]