PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_30_00030
Common NameCHLNCDRAFT_140992
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 605aa    MW: 63869.6 Da    PI: 6.445
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_30_00030genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP23.61.3e-07951246
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTT CS
              SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqC 46
                     C+v gC++dl++  +++ ++++C+ + kap+    g+  rfCqq 
  IGS.gm_30_00030  9 CRVLGCSNDLQS--SFQLKYRICSRCFKAPTLDCGGTPSRFCQQA 51
                     9*********97..5889**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.3E-9652IPR004333Transcription factor, SBP-box
PfamPF031101.5E-7952IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-6951IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MPRGGQRGCR VLGCSNDLQS SFQLKYRICS RCFKAPTLDC GGTPSRFCQQ ARAAAAVYTL  60
WMRFLKSGAA AGAAWRGTSC GARAPGRRGA VAVAARGQTE ETEAEAGAEE EAQATDSGGS  120
GAGVEPGDSQ QSEGWEEPAA TPPPARRPRR YPPEQQQQQQ AQQAQQAQQG SEAPVPQAWQ  180
PPGEPPPPWQ APLAPGVRWQ ERQWQQQAEQ ASVGLPWQQT QQAQHAQQAQ QAGWLPAALA  240
WGAEPSCWRQ QLPWAAADPP RPHPQPQQAQ QQAQQQAQQQ AQQAQHPQQA QHPQQAQHPQ  300
HAQQRWQQAG SPQAAAGQLP AWLDAYLPPE PGCGTLPLPP PQQTQQQEQP PRREAAADWL  360
QARWPAAAAA AQAPHPHTAG PAWQGAGWEG GAAQACLAAT APRQPAPADS LAAQSQQEEQ  420
PGEAWQPLAP PPPPLPGRPA PPLGQLVAQA TAALSAALAP AGGAQLAPGE QARLAAEIEA  480
ALCAALVPRG GPEVEVALAG QPAAAAPARL AVSPPPPLPQ PQQPQLPPPH HHHRRQYQQH  540
QQQEQEQEQA QQAGPVASLA ARAEAALEAA LARQQRLAAD LQAARQAAAL AALEQPTGQE  600
GGWE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005843487.10.0expressed protein
TrEMBLE1ZRY50.0E1ZRY5_CHLVA; Expressed protein
STRINGXP_005843487.10.0(Chlorella variabilis)
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]