PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_28_00102
Common NameCHLNCDRAFT_140071
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family GATA
Protein Properties Length: 569aa    MW: 56669.5 Da    PI: 5.7496
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_28_00102genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA32.61.1e-10335368134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++Cgtt+Tp W r++    tLCnaCG+  +++g
  IGS.gm_28_00102 335 CAHCGTTDTPRWWRDNYPVGTLCNACGIWLKRHG 368
                      ****************99999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.66E-11327375No hitNo description
SMARTSM004019.4E-8329380IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.0E-14329374IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011414.932329373IPR000679Zinc finger, GATA-type
CDDcd002021.16E-11334373No hitNo description
PfamPF003202.8E-8335368IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MPAAAAAAPS PLKPLERDAD AIQSLLGLAA APSGELSPTG PWQGWESSGA GREDAQLRRR  60
LSHSDMQQPR LRFPAPLFRL LFGDVSSSSS RGTQVALQTD GGGCVEAAAV QDGGAYLVAG  120
QAVQQLYRTL GADLADVLTF QAAGCTSSGT PIAACCLAAK ADPAVRKAAA AAAAAADAAA  180
AQRSAAGSPA SPELLLPSQQ QRQQQRQAPG SGAGAAGRHA DEQEPLAPPT IANTDALAAA  240
APGSGNTASQ GDAAEAEAAA ALAAAADDES ESAAAAAAVA AAAAAASMDD SGRDPDWQAK  300
PKARGRPRKR RPTGTASTAA GASSGRQAQE AAATCAHCGT TDTPRWWRDN YPVGTLCNAC  360
GIWLKRHGYP RPVQFFLNPL TAGAATTGSA KVAAAAAAAA AQQQQQQQQQ QGSTAGGGGS  420
REAPAEAEYY LINGRPKRRR AAPGGGAPSS STAGAAAGPE AAGEGAAAAA AAASDPPINF  480
EAAGSRAFVA EGGSEPAAAL VHFGWAPSSR AAHDMFGAVS RYGEASQEVT VDDFELLSDC  540
KATATLQLRP GARVASWDAL VLSFVGSL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005843680.10.0hypothetical protein CHLNCDRAFT_140071
TrEMBLE1ZRI70.0E1ZRI7_CHLVA; Uncharacterized protein
STRINGXP_005843680.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4830810
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]