PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_21_00140
Common NameCHLNCDRAFT_138661
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 1281aa    MW: 128507 Da    PI: 7.3209
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_21_00140genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP28.93.1e-09144189249
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                      Cqv  C+ad+s +key++r+k+C  h  +p ++  g++ rfCqq  r 
  IGS.gm_21_00140 144 CQV--CHADVSALKEYYQRYKICPNHCVMPCIVRGGEHLRFCQQLERH 189
                      665..***************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-12140189IPR004333Transcription factor, SBP-box
PROSITE profilePS5114110.349141206IPR004333Transcription factor, SBP-box
PfamPF031102.0E-9144190IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-10144189IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1281 aa     Download sequence    Send to blast
MQGASWLQQA AAPAAPSADG DRPAFGAAAA AAGAALALAQ GSPRLMMAPS QALLHIPWAL  60
DQFQWDSAAL TATQAAAPPS AALAAQGAAA WAQAQPFSQF DGAAAAASDA SGSSSLLPGW  120
PDAAAPAPDA AAMAFGGSRG GAACQVCHAD VSALKEYYQR YKICPNHCVM PCIVRGGEHL  180
RFCQQLERHN ERRRNLTSQK KKKGQEGAGA AVGGAATLGA PLASTAGPGA ENRRRRQKRA  240
ASAEAEEAPG AAAQPAVLPR VLAPAGAAPA GIASGRGQAA MDLDDLPLLL GMAGVPSPPA  300
TRLLQLPPLP GLLSPELGIE GLLVPSPPRL APSLPPGSAA QAAAAGPAHP TVQPRAGSEQ  360
QEQQRQQQLQ AVIAAARVSG AALPGRTAQA PPAPHQAGTP AGQAPAPGGH DFDALITDLF  420
GPCAGGQEGG HAWLAELLLP AVVARASAQQ QQQQQVKQEQ ALPGAFPAGL PSAPQQQLQH  480
RQEWSYQPPP PSSFVPSPGL PASSYGAAGA AAPAHAPLPA PFLQGDTPTP QPLLPAGQLR  540
QLAGGHAPPP ESLQQALQMI QWQQQQEQAA REQEQAQQQA QEQELLPLEE QARSIRLSMK  600
LFSSTPDQLP PELRQELAAL LCSPNLEGYL RPGCDPQQLA LLQQQGLAAA LEQLLQGQSG  660
LGSLLQRVPA LVQLEGEVAL VSAGRVVRIL QLSSCAGIVP TINSISPIAL HTGPAATASS  720
SGASNARDSI LVRGQNLAGQ QQRLLVRSGG SYPLVEILAS SGTAGGTTRA SVAAAFERPA  780
EEWLEIRLPQ AQQGLFTVEV QRGALLGSSR VLLALDNAAA VAELRQLEGC TAGFASVDTF  840
LRSIALVLHH RQVQAQQQGG TTTDGSGTDG FDPASGTATD SDHPAESAAA ALAAAASSAA  900
RAGVVAASRR GWPALAALLL PSVAADGSST EHAVHAMDAL CPAGATLLLL AAASGSAAVL  960
EACFSWDVAA PAGPAALTPL HIGAAARSGP VVKALFEMDP AGASQAWHTA LSSDGLTPAT  1020
FAAWSKQRQQ EQQQPAVPGA APSAGSAALS LSSRAGSSCS KAGSRLEGSM VLGPVDEEAP  1080
AEPSALPAHK RQGSRSSLPG SPTGVAAASA TSDSSDGSSQ LLGRLSRLSV ASSASQPGTP  1140
QRQWSAAASL PGTPGSRRGA APAPATPTAG VDSMPRPSNP GTPAGSVLGP SASASASPAA  1200
AAKAAAGAGS ISTSIIVSAQ TASPTAALPS HAAPPPAAPG SGSIPAQRPG GGGACWAAGH  1260
GLRKLGARLL RWCRDAGPRL *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005844784.10.0hypothetical protein CHLNCDRAFT_138661
TrEMBLE1ZNH40.0E1ZNH4_CHLVA; Uncharacterized protein
STRINGXP_005844784.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.14e-08squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]