PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_17_00096
Common NameCHLNCDRAFT_136692
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 343aa    MW: 36267.2 Da    PI: 8.7864
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_17_00096genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP51.23.3e-1665134273
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 
                      C+++gC   l+   +y+ ++ +C+ + +++v  v+g+ +r+CqqCs+ h l+ f++++rsC+  L +h + r
  IGS.gm_17_00096  65 CRIPGCGGRLA--ASYNMKYCICNRCREQKVLDVHGVPHRWCQQCSKLHGLEAFEDARRSCKGSLLRHQQLR 134
                      99*****9996..58*****************************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.2E-1558124IPR004333Transcription factor, SBP-box
PROSITE profilePS5114116.06762137IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-1464136IPR004333Transcription factor, SBP-box
PfamPF031108.9E-1665134IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVETPGGDVP FELDTLAADP ATTEHHNNAS EPSLATSGSH GEDGASCGSN PSSRQRGKQP  60
HRRQCRIPGC GGRLAASYNM KYCICNRCRE QKVLDVHGVP HRWCQQCSKL HGLEAFEDAR  120
RSCKGSLLRH QQLRWASSRR ATGGAAEEAQ EQRRARSPQA RPPPLPQLPP QLVQLAPSPW  180
ALLPPTPPPL AVAPASALHR QAGAPPRAPD LQLAHLALQQ LEADMPDTLW VPSAAQLDHF  240
NSQMGFQLEA SFATPPPALP PSLPPLALRG STAAGSSGNA SGCAAPAHTP LPTVVQALFI  300
GGEQAWPLAP GIAGLACAGQ AQRLMHPGLI TRKNGKTYRA LP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005845544.10.0hypothetical protein CHLNCDRAFT_136692
TrEMBLE1ZKU90.0E1ZKU9_CHLVA; Uncharacterized protein
STRINGXP_005845544.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-10SBP family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]