PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_17_00054
Common NameCHLNCDRAFT_136650
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 1004aa    MW: 98947.1 Da    PI: 7.8784
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_17_00054genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP91.11.2e-28133205375
                      SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS
              SBP   3 qvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 
                       v+gC a+l +ak y+rr+++C+ h  ++++ ++g+eqrfCqqC+rf ++ ef+ +++sCrr+L++hnerrr 
  IGS.gm_17_00054 133 AVPGCGAELVTAKGYYRRYRICQLHCSMASMQMDGREQRFCQQCGRFQDIGEFEGSRKSCRRKLKRHNERRRV 205
                      699********************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-24129193IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.17129206IPR004333Transcription factor, SBP-box
PfamPF031105.2E-27133204IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-25133207IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1004 aa     Download sequence    Send to blast
MASVAPPSAS EAGDGQDRDA APLPPAGAGQ GAAEERAAAT AGDDTPGGAA GAPTSDAGAS  60
GSASGQLMHA QPAAAQPRGQ LAATGTAGTP AAAAAQAAAA GLAPPGPAAA RQQQAQQGPG  120
GRATAAATAA AAAVPGCGAE LVTAKGYYRR YRICQLHCSM ASMQMDGREQ RFCQQCGRFQ  180
DIGEFEGSRK SCRRKLKRHN ERRRVEYVRE SEEEEEEAQQ EESEATEERE EEALLGGSGA  240
GRRRRPHPAR SASAGVAAGS AGGTAGSRGR AARSGSDAAV AAVAAAASGA AAAAAAAAAS  300
AAGLQQSLRE GDAAAAAAAA AALPELPALM LPGPLGAAAG AAAPLLSVPI VAPQLLAAAQ  360
QQAQQRQAAQ QQGQAQQRQA AQQQGQAQQA QQAQQQQQWR QGQGQEQQAT SPVGSLPGMP  420
DLQLPASNSP FYLELPSPFL GSTPTSGAAP EAAGQLQQGT LTMPRGGSGA GAGAPPAGLA  480
PLVQRTASLQ EQLGIAHAHS QATAAAAAAA AGAQLAARGS LAGMAAGGGP MLEAQGSAVG  540
GAEAGAAAAV PAVAPLAAAG AGGAAAVPAE DLLVFNCAPD QLLPLVRAEL ERLTQASPAM  600
LEGYIRPGCT HLTLSLLLAW GEAEGLLARG LPLRRWLAGG ALGPLARHDM VVQFGGQLTT  660
LRGGQVAAAI DLRRPPAGLA AAGLPRLASL HPFCVLAGQP GVVTLSGTSI TGSRDLVLCR  720
QQGRHLAAEF HGAGCEGTSG GGGGGGGRED PGPLQPPPAK RARLAAAPAG REEEGRGGCS  780
SGRRQGCAAG RGPPNGRQPP EQLCIKPLGV LPGWVEVEVQ RGCVLSEPLP LLALPCAAAV  840
AEVRQLAADS AGICDAPAFL RRVGLVVQYL SRRQLAAAGH RVAPYPPATR QRIARMACQL  900
AEVAAGRGWH ALAALLHPAQ AAAAGGERHA GGCCGSSPAV APPAAAAVAL PPATAEAAAA  960
ACGAPPHSMP LSAAAAAGSG AQREPAPAPQ QQVEASSCCS IGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-181372041683squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192203RRKLKRHNERRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005845530.10.0hypothetical protein CHLNCDRAFT_136650
TrEMBLE1ZKR90.0E1ZKR9_CHLVA; Uncharacterized protein
STRINGXP_005845530.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.15e-14squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]