PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_13_00253
Common NameCHLNCDRAFT_135325
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 433aa    MW: 44607.9 Da    PI: 9.3896
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_13_00253genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP58.22.2e-18884174
                     --SSTT-----TT--HHHHHTT--HHHHT-S-E...EETTEEEEE-TTTSSEEETTT--SS--S-STTTT------- CS
              SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvv...lvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrr 74
                     +Cqv g e  +  +++++rr  +Ce h++a++v     sg   rfCqqC+r   l +fD ++rsCr  L+k   r+r
  IGS.gm_13_00253  8 RCQVCGAELGVDVTRSFFRRNAICEEHARAETVpdpSWSGGLMRFCQQCTRLQPLAQFDGTRRSCRASLSKRRIRKR 84
                     6***99999999******************999444579999***************************99877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-17573IPR004333Transcription factor, SBP-box
PROSITE profilePS5114116.665686IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.24E-16785IPR004333Transcription factor, SBP-box
PfamPF031105.9E-23984IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MQVVHDVRCQ VCGAELGVDV TRSFFRRNAI CEEHARAETV PDPSWSGGLM RFCQQCTRLQ  60
PLAQFDGTRR SCRASLSKRR IRKRPGGSPR GGKRTALYAR CGGGNTLHGS NSDSEGSGGG  120
HGSSDNLRMQ YGPHRHQLPP HPQWYEASGS ASLRSSNSEQ AMTSGSAPAP PSWGGPAAAG  180
AAEQTQRWLA ARQAPPRGAF PSGPVAAAAA SAPPPGPAVG SVLANLSTTD LQRLASLLER  240
LQSPLPQPPL QPQQSAYLAP SLAPLLYRAP LPATGSTAAA QLAQMLAGLG TSAAHVRQAL  300
AGLGPAGALL LQQIDAVSQR ELQQRQQQQE QQLHEAQARL AQLLQAVLAP TASSGQQQQQ  360
QEQLVAPPPA VGTDTPAGTT TDAAAEASTG AATGTSASAA AGNSTSAQPD PVLQQFLGML  420
LSAAQAPAAP QP*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005846796.10.0hypothetical protein CHLNCDRAFT_135325
TrEMBLE1ZHZ60.0E1ZHZ6_CHLVA; Uncharacterized protein
STRINGXP_005846796.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.43e-12squamosa promoter-like 11
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]