PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_13_00010
Common NameCHLNCDRAFT_135082
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C2H2
Protein Properties Length: 482aa    MW: 48870.2 Da    PI: 9.3486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_13_00010genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.7e-061738323
                     ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                     C +C+++F++  nL +H+r  H
  IGS.gm_13_00010 17 CFYCDRVFKDEQNLITHQRErH 38
                     99*****************988 PP
2zf-C2H213.40.000233962123
                     EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                     y+Cp C+k  ++   L +H  + H
  IGS.gm_13_00010 39 YRCPECSKKLNTAKALSVHCLNvH 62
                     9******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-61261No hitNo description
SMARTSM003552.61538IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9331538IPR007087Zinc finger, C2H2
PROSITE patternPS0002801738IPR007087Zinc finger, C2H2
PfamPF139120.0151739IPR007087Zinc finger, C2H2
SMARTSM003550.0113962IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8293962IPR007087Zinc finger, C2H2
PROSITE patternPS0002804162IPR007087Zinc finger, C2H2
PRINTSPR012175.1E-1097109No hitNo description
PRINTSPR012175.1E-10115131No hitNo description
PRINTSPR012175.1E-10154166No hitNo description
PRINTSPR012175.1E-10166187No hitNo description
PRINTSPR012175.1E-10192208No hitNo description
PRINTSPR012175.1E-10215232No hitNo description
PRINTSPR012175.1E-10280305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVRKRKKQEQ EEEVTWCFYC DRVFKDEQNL ITHQRERHYR CPECSKKLNT AKALSVHCLN  60
VHKRALTAVP AALDGREDPA WDIFGMAGVP IGMQPGEQPP YKPGQKPADG GGAGGATPGA  120
VPGGAAPGMA PPGMMPGMAP PHMMGHPGMQ GGFHGPPGYP PYGMPPPGMH PYGMPHPGMH  180
PYGMRPPPHM MPPPGMPPPG YRPGMPPHGM PPHGAPGGPL FPAAGGPPAP GGALFPAAAG  240
AGAAPPAAAG AAAGTDGLVW TNEQCSQEER RASLPKYAAA AAKPAAAAAP QPGGPPAPAP  300
GQAPPPQQQP QFMGAPSGPP AGAPPPSMGR PPPPMQAAQQ PGMSGPPPMQ GFVRPMGQPP  360
GPPPGSMPPP QHAPQHPGMG GTPPGMPHPG QQAAPPGGMP PPMGPPPGMP PLQQQAPPPG  420
AMYQGQPPQQ QHQHLMGGPP QHQQHMMGGL PAPGHQQMGM RPPGMPGFAP AGPPAGTPPP  480
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
126RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005846563.10.0hypothetical protein CHLNCDRAFT_135082
TrEMBLE1ZHG90.0E1ZHG9_CHLVA; Uncharacterized protein
STRINGXP_005846563.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41351011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.18e-22C2H2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]