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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han008799 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | DBB | ||||||||
Protein Properties | Length: 243aa MW: 26687 Da PI: 4.5295 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.7 | 2e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++l C ++ lC+ C +e H H+ Han008799 4 QCDVCEKSPATLICCADEAALCARCDVEVHAAnklaskHQ 43 7*****************************6556666666 PP | |||||||
2 | zf-B_box | 28 | 4.6e-09 | 54 | 95 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ ++ek + +fC +++ l+C+dC + +H+ H Han008799 54 KLPPCDICQEKTAFIFCVEDRALFCRDCDEPIHSAgtlaanH 95 6789*****************************656666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.172 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.65E-7 | 3 | 46 | No hit | No description |
Pfam | PF00643 | 6.6E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.2E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.058 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.0E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.7E-7 | 54 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.89E-9 | 56 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MKIQCDVCEK SPATLICCAD EAALCARCDV EVHAANKLAS KHQRLLFNNT LSDKLPPCDI 60 CQEKTAFIFC VEDRALFCRD CDEPIHSAGT LAANHQRFLA TGIRVAVGSG CSSVGSEKNT 120 YEPLPPAAEV KIAAVPEIVP VKTPVQQVGG YGSPAWGVDD LLQFDDFEPS DKKEQLEFGD 180 IEWLTDYDVF GDTAAEVPLT SASQPINTGS FRQTKLYGSN KQRPRYDLPY MEMMMSTLHV 240 PDX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.918 | 0.0 | bud| embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021982620.1 | 1e-167 | B-box zinc finger protein 25-like | ||||
Swissprot | Q96288 | 1e-74 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | A0A251VQS0 | 1e-166 | A0A251VQS0_HELAN; Putative B-box-type zinc finger | ||||
STRING | VIT_05s0102g00750.t01 | 2e-95 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 2e-74 | DBB family protein |
Publications ? help Back to Top | |||
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