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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han008006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 161aa MW: 18034.5 Da PI: 6.5523 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 92.8 | 3e-29 | 31 | 86 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +rYkeClkNhA+ +G +avDGCgEfm++ geegt ++lkCaA +CHRnFHR+eve + Han008006 31 YRYKECLKNHAVGIGRQAVDGCGEFMAA-GEEGTLDGLKCAAYNCHRNFHRKEVEGQ 86 79*************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-21 | 19 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.2E-26 | 31 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.7E-27 | 32 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.308 | 33 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MEFDEHEDHE DEIVGIQMPV PPVKTTGGGG YRYKECLKNH AVGIGRQAVD GCGEFMAAGE 60 EGTLDGLKCA AYNCHRNFHR KEVEGQQRDN QHIQHQHHHH HHHQPQYITA APYNYHQRPA 120 GYLHMKAVPS SVHQQRPLAL PSSASREDLE EDSNPSSSGG X |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.6398 | 0.0 | embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022039850.1 | 2e-84 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | A2Z259 | 4e-31 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A251UUZ2 | 5e-83 | A0A251UUZ2_HELAN; Putative zinc-finger homeodomain protein 2 | ||||
STRING | XP_010266504.1 | 1e-38 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-27 | homeobox protein 22 |