PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007635
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MYB
Protein Properties Length: 188aa    MW: 21067.6 Da    PI: 4.7944
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-59038PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-091057346
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                      W+ e d  + +a   ++ +    +W++Ia++++ +++ +++k+++  
        Han007635 10 VWSREQDIAFENALVSYPDEddeeRWEKIAAEVPGNKSVEEIKNHYEL 57
                     6*****************99**************************75 PP
2Myb_DNA-binding41.43.4e-13123166346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+  + q+
        Han007635 123 AWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVAXHAQN 166
                      6****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-4359IPR009057Homeodomain-like
PROSITE profilePS500907.039359IPR017877Myb-like domain
SMARTSM007179.3E-8761IPR001005SANT/Myb domain
SuperFamilySSF466891.52E-8967IPR009057Homeodomain-like
PfamPF002497.7E-71056IPR001005SANT/Myb domain
CDDcd001672.16E-61159No hitNo description
PROSITE profilePS5129416.064116172IPR017930Myb domain
SuperFamilySSF466892.21E-12118167IPR009057Homeodomain-like
SMARTSM007172.1E-9120170IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.3E-13121166IPR006447Myb domain, plants
PfamPF002492.8E-11123166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-11123165IPR009057Homeodomain-like
CDDcd001673.37E-10123167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSDKKVKESV WSREQDIAFE NALVSYPDED DEERWEKIAA EVPGNKSVEE IKNHYELLLE  60
DLERIESGVV PLPVYSSSLD DSESQAGDVG TSKKGGNAGQ NINESNHGGK GSKSEQERRR  120
GIAWTEEEHR LFLLGLEKYG KGDWRSISRN FVVTRTPTQV AXHAQNISSF NSMNKIDGGQ  180
HHDITVSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1311781176RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021986305.11e-118transcription factor SRM1-like
SwissprotQ9FNN63e-71SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A251VS291e-116A0A251VS29_HELAN; Putative duplicated homeodomain-like superfamily protein
STRINGXP_009351753.13e-77(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-73MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]