PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han007313

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

NAC

Protein Properties

Length: 206aa MW: 22906.8 Da PI: 9.3344

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-58524	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.1	6e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelvv+yLk+kv++++l++ ++i+evd++k++PwdLp + +++e +fFs+r+ ky++g+r+nrat+sgyWkatg dk+++ + + l Han007313 14 LPPGFRFHPTDEELVVQYLKRKVHSSPLPA-SIIPEVDVCKSDPWDLPGGDSDQQEERFFFSTREIKYPNGNRSNRATQSGYWKATGLDKQIMGAnQVGL 112 79**************************.89***********6555667899*******************************9745556 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfykg+ p+g++tdW+mheyrl Han007313 113 VGIKKTLVFYKGKPPTGSRTDWIMHEYRL 141 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-55	6	148	IPR003441	NAC domain
PROSITE profile	PS51005	52.131	14	162	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MEKLQNANAV LLRLPPGFRF HPTDEELVVQ YLKRKVHSSP LPASIIPEVD VCKSDPWDLP 60 GGDSDQQEER FFFSTREIKY PNGNRSNRAT QSGYWKATGL DKQIMGANQV GLVGIKKTLV 120 FYKGKPPTGS RTDWIMHEYR LATTATNSGS GKVGTVQNLF EEKRELQGRE KNVPVFYDFL 180 ATPKVKTTSS SSSGSSGITE ESSTNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-48	12	153	18	157	NAC domain-containing protein 19
3swm_B	9e-48	12	153	18	157	NAC domain-containing protein 19
3swm_C	9e-48	12	153	18	157	NAC domain-containing protein 19
3swm_D	9e-48	12	153	18	157	NAC domain-containing protein 19
3swp_A	9e-48	12	153	18	157	NAC domain-containing protein 19
3swp_B	9e-48	12	153	18	157	NAC domain-containing protein 19
3swp_C	9e-48	12	153	18	157	NAC domain-containing protein 19
3swp_D	9e-48	12	153	18	157	NAC domain-containing protein 19
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Han.1901	0.0	embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269\|PubMed:20388856}.
Uniprot	TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022022777.1	1e-121	NAC domain-containing protein 83-like
Swissprot	Q9FY93	4e-73	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A251RV05	1e-119	A0A251RV05_HELAN; Putative NAC domain-containing protein
STRING	cassava4.1_014491m	3e-82	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	8e-75	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]