PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han007155

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

CAMTA

Protein Properties

Length: 212aa MW: 24190.3 Da PI: 6.7978

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S32082672	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	173.7	2.6e-54	13	127	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e + rwl++ e++ iL+n+e+ +l +e++++p+sgsl+L+n++++r+frkDG+sw+kkkdgk v E+he+LKvg+ve+l+cyYah+eenp+fqrr+yw+ Han007155 13 QEaQFRWLRPGEVLFILVNYEETQLNHEPPQKPPSGSLFLFNKRVLRFFRKDGHSWRKKKDGKNVGEAHERLKVGNVEALNCYYAHGEENPNFQRRSYWM 112 55589********************************************************************************************* PP CG-1 102 Leeelekivlvhyle 116 L++++e+ivlvhy++ Han007155 113 LDTAMEHIVLVHYRD 127 ***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.95	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.3E-72	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.1E-49	14	127	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MMMSGYNIKD LIQEAQFRWL RPGEVLFILV NYEETQLNHE PPQKPPSGSL FLFNKRVLRF 60 FRKDGHSWRK KKDGKNVGEA HERLKVGNVE ALNCYYAHGE ENPNFQRRSY WMLDTAMEHI 120 VLVHYRDITI GKHSAGPISS LTLGSSNIIQ SSHSYTTQLI SPSACEFDEP YTSLSAGPTS 180 IEASQSVLTT SHRPNLIERI EETDPSPDLQ II

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:12218065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021999261.1	1e-148	calmodulin-binding transcription activator 4-like isoform X1
Refseq	XP_021999262.1	1e-148	calmodulin-binding transcription activator 4-like isoform X2
Swissprot	Q9FYG2	8e-57	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A251T5M5	1e-146	A0A251T5M5_HELAN; Putative ethylene induced calmodulin binding protein
STRING	XP_010250675.1	1e-75	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	3e-59	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]