PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Han006966 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 221aa MW: 25589.5 Da PI: 8.4976 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.4 | 1.1e-39 | 74 | 150 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls +++yhrrh+vCe+hsk+pvv++ g+eqrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+++ Han006966 74 CLVDGCRADLSACRDYHRRHRVCETHSKTPVVTICGKEQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKARP 150 **************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.7E-32 | 67 | 135 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.197 | 71 | 148 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-36 | 72 | 154 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-29 | 74 | 147 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MDWVFTPSSS WDLTELDIDD FDLLPENNQD MEAAFSGSDR DGTDGILSEQ KHSIMPSCSS 60 KKQRVESNEQ QVSCLVDGCR ADLSACRDYH RRHRVCETHS KTPVVTICGK EQRFCQQCSR 120 FHSLGEFDEV KRSCRKRLDG HNRRRRKARP ESMYFNYGSF FTNHQGTKLL HFGGSPATTF 180 GDWREKHNLK PKFQVTAEQR TPSDSYARSA CQKRRFRFCG V |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-26 | 74 | 147 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021982433.1 | 1e-157 | teosinte glume architecture 1-like | ||||
Refseq | XP_021982434.1 | 1e-157 | teosinte glume architecture 1-like | ||||
Swissprot | B9DI20 | 1e-43 | SP13A_ARATH; Squamosa promoter-binding-like protein 13A | ||||
Swissprot | P0DI11 | 1e-43 | SP13B_ARATH; Squamosa promoter-binding-like protein 13B | ||||
TrEMBL | A0A251TYL9 | 1e-131 | A0A251TYL9_HELAN; Putative transcription factor, SBP-box | ||||
STRING | VIT_14s0068g01780.t01 | 2e-58 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 4e-46 | SBP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|