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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Han006448 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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| Family |
NAC |
| Protein Properties |
Length: 240aa MW: 26984.8 Da PI: 10.0156 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Han#S48337822 | PU_unref | Unigene | View CDS |
| PUT-169a-Helianthus_annuus-38348 | PU_ref | plantGDB | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 175.3 | 1.7e-54 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
+ppGfrFhPtdeel+++yL +kv ++++ + ++i+evd++k+ePw+Lpk +k + kewyfF+ +dkky+tg r+nrat++gyWkatgkdke+ + ++ lv
Han006448 16 MPPGFRFHPTDEELITHYLSNKVVDNNFVA-KAIAEVDMNKIEPWELPKLAKLGGKEWYFFCVNDKKYPTGLRTNRATAAGYWKATGKDKEISR-GKLLV 113
79*************************999.89***************8888899*************************************99.999** PP
NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
g+kktLvfy grapkgekt+Wv+heyrle
Han006448 114 GMKKTLVFYMGRAPKGEKTNWVIHEYRLE 142
***************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MEKLSGHGQE EDQMDMPPGF RFHPTDEELI THYLSNKVVD NNFVAKAIAE VDMNKIEPWE 60
LPKLAKLGGK EWYFFCVNDK KYPTGLRTNR ATAAGYWKAT GKDKEISRGK LLVGMKKTLV 120
FYMGRAPKGE KTNWVIHEYR LEGKSLLSNL PRSAKNEWVN CRVVHKTSGG KKLHISDLTR 180
TDSGGVATSL PPLESPQIIP NLSXSIHVPC FSIRSNSKHS KNMLNISSQP ISTQSIPFVL
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-55 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-55 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-55 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-55 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 5e-55 | 9 | 172 | 7 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 5e-55 | 9 | 172 | 7 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Vidal EA,Álvarez JM,Gutiérrez RA
Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
Plant Signal Behav, 2014. 9(3): p. e28501
[PMID:24642706] - Lee MH,Jeon HS,Kim HG,Park OK
An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
New Phytol., 2017. 214(1): p. 343-360
[PMID:28032643]
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