PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han006269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 27134.5 Da PI: 7.1284 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.8 | 3.8e-11 | 6 | 53 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 W++eEd+ + +a++ + + +W+tIa+ ++ ++t ++k ++q + Han006269 6 VWSKEEDKAFENAIATHWSQdskeQWDTIASLVP-TKTIPELKQHYQLL 53 7*********************************.***********965 PP | |||||||
2 | Myb_DNA-binding | 38.7 | 2.3e-12 | 132 | 176 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r Rt+ q+ s+ qky Han006269 132 PWTEEEHRLFLLGLDKFGKGDWRSISRNYVISRTPTQVASHAQKY 176 7*****************************89************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.502 | 2 | 58 | IPR017884 | SANT domain |
SMART | SM00717 | 8.6E-6 | 3 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.94E-9 | 5 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-8 | 5 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-5 | 5 | 52 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.24E-8 | 7 | 54 | No hit | No description |
PROSITE profile | PS51294 | 16.887 | 125 | 181 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.28E-17 | 127 | 182 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-17 | 129 | 179 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.7E-10 | 129 | 179 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 130 | 175 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.2E-11 | 132 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-9 | 132 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSSSKVWSKE EDKAFENAIA THWSQDSKEQ WDTIASLVPT KTIPELKQHY QLLVEDVDDI 60 EGGLIPIPKY LGEESSSSST NPQGSGGGGL NSNRRSSCNY SNGFSGFGHD SAGQSGGQGN 120 SRAEQERRKG IPWTEEEHRL FLLGLDKFGK GDWRSISRNY VISRTPTQVA SHAQKYFIRL 180 NSMNRDRRRT SIHDITSVNN GDXVVPPNPI TASQVVQPIN SWCTMNIRPT TQYAAGMVCT 240 DTMGX |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021983810.1 | 1e-142 | transcription factor MYBS1 | ||||
Swissprot | Q9FNN6 | 2e-75 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A251TYS3 | 1e-141 | A0A251TYS3_HELAN; Putative duplicated homeodomain-like superfamily protein | ||||
STRING | PGSC0003DMT400014350 | 1e-107 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 8e-58 | MYB family protein |
Publications ? help Back to Top | |||
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