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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han006217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | HSF | ||||||||
Protein Properties | Length: 246aa MW: 28643 Da PI: 9.2161 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 66.7 | 5.3e-21 | 2 | 55 | 40 | 102 |
THHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 40 vLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 +LpkyFkh+nf+SFvRQLn+YgFkk++ e+ weF++++F kg+++ll++i+r+k Han006217 2 LLPKYFKHNNFSSFVRQLNTYGFKKIDPEQ---------WEFANDEFIKGQRHLLKNIHRRKP 55 79************************9998.........*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.8E-15 | 1 | 53 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.3E-19 | 1 | 53 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.26E-17 | 1 | 53 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.9E-17 | 2 | 53 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-10 | 2 | 14 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 3 | 27 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-10 | 15 | 27 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
ELLPKYFKHN NFSSFVRQLN TYGFKKIDPE QWEFANDEFI KGQRHLLKNI HRRKPVHSHS 60 TPPQGTSSSP LSSSEKKEYE DEIKKLKHET SSLRLQLLTH NQENQEKEHK LSFLRERLHT 120 IQLKQKKMMS FLAQVLEKPR ISSSRTQYLE SNSRKRRLLI STYLQGEANA EETENIEVHE 180 LINKLDSSLK FWVDFVNDVK TSSQEQDDVG DHDSKLDHAG SSTISFDHIN QDSRVKSKAS 240 GIDVNA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022021057.1 | 1e-166 | heat stress transcription factor A-4c-like | ||||
TrEMBL | A0A251RV60 | 1e-165 | A0A251RV60_HELAN; Putative heat stress transcription factor A-4b | ||||
STRING | VIT_12s0028g01410.t01 | 1e-71 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 7e-49 | heat shock transcription factor A4A |