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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Han006117 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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| Family |
NAC |
| Protein Properties |
Length: 249aa MW: 26724 Da PI: 6.2797 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Han#S32079607 | PU_ref | Unigene | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 28 | 6.3e-09 | 199 | 248 | 40 | 88 |
NAM 40 ykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
+++P + +++ e+e + Fs+++ ky++g+++nrat sgyWkatg
Han006117 199 RDLDPVVFLeNELLDCEQERFLFSTKEVKYPNGNQSNRATLSGYWKATGL 248
45555544324444567899****************************95 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MLGIVRRNVG GAGGLSSQGF GRLRPVASAI RNYSSGGKEM TVRDALNSAL DEEMAADPNV 60
FVMGEEVGEY QGAYKITKGL LDKYGPERVL DTPITEAXVA GIGVGSAYHG LKPVKEFMTF 120
NFSMQAIDHV INSAAKSNYM SAGQINVPIV FRGPNGPAAG VGAQHSQCYG AWYGSVPGLK 180
VLVPYSSEDA RGLLKAAIRD LDPVVFLENE LLDCEQERFL FSTKEVKYPN GNQSNRATLS 240
GYWKATGLD
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ni4_B | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component: Beta subunit |
| 1ni4_D | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component: Beta subunit |
| 2ozl_B | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component subunit beta |
| 2ozl_D | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component subunit beta |
| 6cer_B | 3e-80 | 36 | 212 | 1 | 177 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
| 6cer_D | 3e-80 | 36 | 212 | 1 | 177 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
| 6cer_F | 3e-80 | 36 | 212 | 1 | 177 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
| 6cer_H | 3e-80 | 36 | 212 | 1 | 177 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
| 6cfo_B | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
| 6cfo_D | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, immature rosettes, and mature rosettes. {ECO:0000269|PubMed:8061040}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). |
| Publications
? help Back to Top |
- Kruft V,Eubel H,Jänsch L,Werhahn W,Braun HP
Proteomic approach to identify novel mitochondrial proteins in Arabidopsis.
Plant Physiol., 2001. 127(4): p. 1694-710
[PMID:11743114] - Tamaoki M, et al.
Transcriptome analysis of O3-exposed Arabidopsis reveals that multiple signal pathways act mutually antagonistically to induce gene expression.
Plant Mol. Biol., 2003. 53(4): p. 443-56
[PMID:15010611] - Wienkoop S, et al.
Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins.
Rapid Commun. Mass Spectrom., 2004. 18(6): p. 643-50
[PMID:15052571] - LeClere S,Rampey RA,Bartel B
IAR4, a gene required for auxin conjugate sensitivity in Arabidopsis, encodes a pyruvate dehydrogenase E1alpha homolog.
Plant Physiol., 2004. 135(2): p. 989-99
[PMID:15173569] - Brugière S, et al.
The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions.
Phytochemistry, 2004. 65(12): p. 1693-707
[PMID:15276431] - Finkemeier I, et al.
The mitochondrial type II peroxiredoxin F is essential for redox homeostasis and root growth of Arabidopsis thaliana under stress.
J. Biol. Chem., 2005. 280(13): p. 12168-80
[PMID:15632145] - Alexeyenko A,Millar AH,Whelan J,Sonnhammer EL
Chromosomal clustering of nuclear genes encoding mitochondrial and chloroplast proteins in Arabidopsis.
Trends Genet., 2006. 22(11): p. 589-93
[PMID:16979780] - Geisler-Lee J, et al.
A predicted interactome for Arabidopsis.
Plant Physiol., 2007. 145(2): p. 317-29
[PMID:17675552] - Hajduch M, et al.
Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.
Plant Physiol., 2010. 152(4): p. 2078-87
[PMID:20118269] - Ge W, et al.
Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen.
Biochim. Biophys. Acta, 2011. 1814(12): p. 1964-73
[PMID:21798377] - Carrie C,Venne AS,Zahedi RP,Soll J
Identification of cleavage sites and substrate proteins for two mitochondrial intermediate peptidases in Arabidopsis thaliana.
J. Exp. Bot., 2015. 66(9): p. 2691-708
[PMID:25732537] - Luethy MH,Miernyk JA,Randall DD
The nucleotide and deduced amino acid sequences of a cDNA encoding the E1 beta-subunit of the Arabidopsis thaliana mitochondrial pyruvate dehydrogenase complex.
Biochim. Biophys. Acta, 1994. 1187(1): p. 95-8
[PMID:8061040]
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