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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han005958 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 28269.4 Da PI: 8.9844 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64 | 4.7e-20 | 14 | 63 | 78 | 128 |
NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + sgyWkatg+dk +++ +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl Han005958 14 AGSGYWKATGTDKVITT-EGRRVGIKKALVFYVGKAPKGNKTNWIMHEYRL 63 579************99.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.283 | 1 | 86 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.15E-29 | 8 | 87 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-9 | 15 | 63 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
XIVLDPGFGL MAVAGSGYWK ATGTDKVITT EGRRVGIKKA LVFYVGKAPK GNKTNWIMHE 60 YRLSDPQRKT GSSRLDEWVL CRIYKKNSSA QKTISGGQTT EQSHGSPSSS SSQFDDVLES 120 LPEIQDRCFN LPRVNSIKTF QQEDQKLNLQ KFDSGNYDWA SIASFGLPEP VVQDPLPQPT 180 MNGGSSMAPI YTMDTKFGRS VEDEVQSGIR SQRVDHPGYF QSNLSPFGHS QSVSNTIDPF 240 GIRYPTQQGV LGFRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-43 | 13 | 92 | 92 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-43 | 13 | 92 | 92 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-43 | 13 | 92 | 92 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-43 | 13 | 92 | 92 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-43 | 13 | 92 | 92 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-43 | 13 | 92 | 92 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021992825.1 | 1e-179 | NAC domain-containing protein 72-like | ||||
Swissprot | A0A3Q7HH64 | 2e-86 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A251T7X7 | 1e-178 | A0A251T7X7_HELAN; Putative NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
STRING | Migut.M00863.1.p | 4e-93 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 8e-59 | NAC family protein |
Publications ? help Back to Top | |||
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