 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Han005958 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
|
| Family |
NAC |
| Protein Properties |
Length: 255aa MW: 28269.4 Da PI: 8.9844 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-169a-Helianthus_annuus-6564 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 64 | 4.7e-20 | 14 | 63 | 78 | 128 |
NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ sgyWkatg+dk +++ +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl
Han005958 14 AGSGYWKATGTDKVITT-EGRRVGIKKALVFYVGKAPKGNKTNWIMHEYRL 63
579************99.9999***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 255 aa
Download sequence Send
to blast |
XIVLDPGFGL MAVAGSGYWK ATGTDKVITT EGRRVGIKKA LVFYVGKAPK GNKTNWIMHE 60
YRLSDPQRKT GSSRLDEWVL CRIYKKNSSA QKTISGGQTT EQSHGSPSSS SSQFDDVLES 120
LPEIQDRCFN LPRVNSIKTF QQEDQKLNLQ KFDSGNYDWA SIASFGLPEP VVQDPLPQPT 180
MNGGSSMAPI YTMDTKFGRS VEDEVQSGIR SQRVDHPGYF QSNLSPFGHS QSVSNTIDPF 240
GIRYPTQQGV LGFRQ
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-43 | 13 | 92 | 92 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-43 | 13 | 92 | 92 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-43 | 13 | 92 | 92 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-43 | 13 | 92 | 92 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 3e-43 | 13 | 92 | 95 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 3e-43 | 13 | 92 | 92 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 3e-43 | 13 | 92 | 92 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
