![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Han005802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 260aa MW: 30023.7 Da PI: 10.1557 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.2 | 2.8e-11 | 32 | 75 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Han005802 32 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 75 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.36E-14 | 22 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-14 | 24 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.053 | 26 | 79 | IPR017930 | Myb domain |
CDD | cd11659 | 2.47E-31 | 27 | 78 | No hit | No description |
SMART | SM00717 | 1.7E-12 | 30 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 7.5E-10 | 34 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
SWGRISSLLV RNPLNSVKLV GXEWLDPSIK KTEWTREEDE KLLHLAKLMP TQWRTIAPIV 60 GRTPSQCLER YEKLLDAACA KDENYEPGDD PRKLRPGEID PNPESKPARP DPVDMDEDEK 120 EMLSEARARL ANTRGKKAKR KAREKQLEEA RRLASLQKRR XIKAAGIDNR HRKRKRKGID 180 YNAEIPFEKR PPPGFYDVTD ESSVVEQPKF PTTIEELEGE RRADKEARLR KQDIARNKIA 240 QRQDAPTAIL PAKQMNDPRT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
5xjc_L | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
5yzg_L | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
5z56_L | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
5z57_L | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
5z58_L | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
6ff4_L | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
6ff7_L | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
6icz_L | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
6id0_L | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
6id1_L | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
6qdv_O | 2e-96 | 2 | 250 | 31 | 280 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 157 | 176 | KRRXIKAAGIDNRHRKRKRK |
2 | 171 | 176 | RKRKRK |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021977549.1 | 1e-158 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 1e-143 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A251U5N8 | 1e-157 | A0A251U5N8_HELAN; Putative cell division cycle 5 | ||||
STRING | XP_010039513.1 | 1e-149 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09770.1 | 1e-137 | cell division cycle 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|