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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Han005589 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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| Family |
Trihelix |
| Protein Properties |
Length: 266aa MW: 29683.2 Da PI: 5.8181 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Han#S18712100 | PU_ref | Unigene | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 54.1 | 4e-17 | 184 | 259 | 5 | 86 |
trihelix 5 qevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
++ ++Li++r e+++r++ k +++lWee+s++++++gf+rsp qCk+ w +l ++y+ k+ k ++ +y+++++
Han005589 184 KKLKKLIKFRGELNNRFQVVKGRMALWEEISSNLSDQGFSRSPGQCKSLWASLVQKYEGSKNDPKA------KKLQYYEDMD 259
67899******************************************************9999887......4577899987 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| CDD | cd12203 | 1.20E-17 | 175 | 244 | No hit | No description |
| Pfam | PF13837 | 1.7E-13 | 184 | 261 | No hit | No description |
| Sequence ? help Back to Top |
| Protein Sequence Length: 266 aa
Download sequence Send
to blast |
SALWPRNGKL LDALHSAAHA SLSSCSIKSP LPHIERTVSE VLRGMVRKYS GKRPEVITHA 60
IENPVAVLAD EINGKLSGLQ SGFEMPLGKT VDGSPKKKRA SKIQQESKDL DPLSGPRETK 120
DDVINDDELL LSEEETATSS VSDSESSDDF WRAYTNTDSI EELENNIKDS NTKKPEKETD 180
GNQKKLKKLI KFRGELNNRF QVVKGRMALW EEISSNLSDQ GFSRSPGQCK SLWASLVQKY 240
EGSKNDPKAK KLQYYEDMDE ILSTPD
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During the early stages of embryo development, first observed at the transition stage. In the heart and torpedo stages, predominantly present in the upper part of embryos. In seedlings, strongly expressed in shoot meristems, hypocotyls, in the vascular bundles of cotyledons, and in the veins of mature leaves. In reproductive organs, detected in inflorescences, especially in sepals, filaments, and stigmas, as well as in mature siliques and seeds. {ECO:0000269|PubMed:25871650}. |
| Uniprot | TISSUE SPECIFICITY: Moslty expressed in inflorescences, seedlings, leaves, flowers and flower buds, and, to a lower extent, in stems, siliques and roots. {ECO:0000269|PubMed:25871650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
